BAC Information

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BAC

Clone NameMSMg01-148H16
Chromosome1 (Build37)
Map Location 96,429,711 - 96,430,045
singlet/doubletsinglet
Overlap genenone
Upstream geneFarp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025
Downstream geneLOC100040685, LOC383603, Tmem157, LOC100041686
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148H16.T7 (MSMg01no148_h16.b1)MSMg01-148H16.TJ (MSMg01no148_h16.g1)
ACCAG351464AG351465
length715706
length of high quality
(start - end)
44 (289 - 332)331 (83 - 413)
definitionCHROMAT_FILE: MSMg01no148_h16.b1 PHD_FILE: MSMg01no148_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:23 2005CHROMAT_FILE: MSMg01no148_h16.g1 PHD_FILE: MSMg01no148_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTGGGAGCTCCCCTACACTCGCAGTTAGCTAGCTAATTGGATAT
TCTTATTGGTAATTTTAAAAATAATCTGAACAAATTCTGTACTCTGCATT
GCTTTTTTCTTTTGTAGGATTCACAACATTACTTGCTTTGGAGATAGGCG
ATCCAACGTTCAAGCAGAGTCTCATAACTCATTGAGACATGCTTTTGCTC
TTCTTGAGAGCTTGTACCCATCACATTGGGTAAAGTCTGGCTTACTTTGG
TTAGAATGAAAATGACCCTATGGATTTACAGGAAATGCAACTATTAGGAG
ATGTGGCCTTGTTAATGTAGGTGTGGACTTGACAGAGGAAGAGTGTCACA
AGGCTGGGCTTTGACCCCCCAAATGCTCAAGTCAGAACCAGCATCACTCT
GATTCTGCTGCTTGCACATCTGGATGTTGAACTTCCAGGCTCCTTTATTA
GCCAGCACGCTATTGAACATGACAGAAATGCGCTAGGCCTCTGACCACAG
CATGTGAACCCCCATTACACGTTTGCCATTGAACGAGATGCCACGAACTT
GATGACTCCTCACAATGATTAAATCCTAAGATATTGCTGAGGAAAGTGAC
AAATATTCTGAATCATCTGCTGGCCAGATCAGTTTGCCCCTGCCTAACCC
ACACACTATTACTCN
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGAGAAAAACGAAAGCAGTACATGC
CCGACTCACACATTTTATCCGTAACTCAACAAAGAGCTGATATTCCAGTA
CAGGGCTGTCAATCACCTCAGCTGCCCTCTAAGCTCCCTTTGTCTGAAGC
AGTGCTGGTAAACCCACAGAAATGAGAATGGTAGCACCACCCAGAACAGA
TAACCCACACTACAACTACAACTCAGTAGTTCTCATCATTTAAAGGCATC
ACTTACACATGACCAAATAGACTGATCTGACTTGGCATTATTACACAATT
AATTAGTTAATTAATCAGCTCAGCACTATGCTTAGACAATACTGGCATCT
GCAAATGAATGGACCCCCCTTTACTCTACAGCAAGAAGTGTCACAATAAT
TTGCATGCTACTACAAATGATAGATTGATTATAAGAGAAAAACCATTGTC
TTTCAGGTTTGGATTAGCATGAGTGTGGTTGTGTTGCAGCTTGCAAGTAT
GTAATACTGAGAGGTAGTTTGCTGCAAGGTTGAATTCAGAGAGGCGCTGG
CATTGCTGCAGGAACAGGAAGTGATGCAATGTTAAGGAAGAGTTCAGCAA
CATTGATAAACATTGTCTATGCTAACTTTGGAATCAAAACTCCAGTTGGA
GTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_h16.g1 MSMg01no148_h16.g1 CHROMAT_FILE:
MSMg01no148_h16.g1 PHD_FILE: MSMg01no148_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:23 2005
         (331 letters)



>mm_chr1_96429511_96430245
          Length = 735

 Score =  613 bits (317), Expect = e-180
 Identities = 329/335 (98%), Gaps = 4/335 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacgaaagcagtacatgcccgactcacacattttatccgtaactcaacaaagagctgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aacgaaagcagtacatgcccgactcacacattttatccgtaactcaacaaagagctgata 476

                                                                       
Query: 61  ttccagtacagggctgtcaatcacctcagctgccctctaagctccctttgtctgaagcag 120
           |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ttccagcacagggctgtcaaacacctcagctgccctctaagctccctttgtctgaagcag 416

                                                                       
Query: 121 tgctggtaaacccacagaaatgagaatggtagcaccacccagaacagataacccacacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgctggtaaacccacagaaatgagaatggtagcaccacccagaacagataacccacacta 356

                                                                       
Query: 181 caactacaactcagtagttctcatcatttaaaggcatcacttacacatgaccaaatagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 caactacaactcagtagttctcatcatttaaaggcatcacttacacatgaccaaatagac 296

                                                                       
Query: 241 tgatctgacttggcattattacacaattaattagttaattaatcagctcagcactatgc- 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 295 tgatctgacttggcattattacacaattaattagttaattaatcagctcagcactatgct 236

                                              
Query: 300 ---ttagacaatactggcatctgcaaatgaatgga 331
              ||||||||||||||||||||||||||||||||
Sbjct: 235 tagttagacaatactggcatctgcaaatgaatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 735
Length adjustment: 9
Effective length of query: 322
Effective length of database: 726
Effective search space:   233772
Effective search space used:   233772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)