CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAACCGCGGAAT
TCACTAAATCTCTTCCGTGCGCACTGCTATTCTGAGCTTTTCTTTTTCTT
AGTATCTTCTGAGGACATTGTTACGTTGTTACTATCGAGTAAACTTGATC
CTAAACCAATGTGTCTTAGTTACTTTGTATCTCAAGTATTCATGTTTGAT
TCTGATTGTATCGGCATTGTAACAAGTAGGACACAATGTTGTTGTTGTTG
TAGAAAGATGTGCTAGGATGTCTTTATGCACCTAACTTTTATTTTATGCT
ATTGTAATAGCTACTCCTAAATTGTGTGTCATAATCAGATGACAAAAAAA
ATCTAGTGTCTCGATTTTCAGTATTAAGGAAACCTGAAAAGTATTTCTCA
GAATTTCCATTTATCTACACACACAGCTTCAAAATCTAAGAGTCATATTC
CCTGAGCTGAAATTTAGTACTGAGAGTCATTCATTGCAGAGTTTGATTTA
AAATAACTACGCATAAAATACTTGGCTTTATTCATATATTCTTCTATATG
TAGGTTGGTTCTGCAGATATCAACATAAATTTAATTATGACATAATTACT
TTATATAAAGTGGCTGCAGAATAGATTGAACATTGAAGTGGAACAAGTGT
GCATATACGCATACACCCACAGGCACACTACCTTGGTCTTTTATCATTTT
GGATGAGGTAGTTGTAGGGTTTTTTTAGCAGTACCTTTTACTT

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTCCCAATTCCAGGCCTTCTGCTTTAGCTGGCAAGAAGAAAGG
AGTGCCGCCCCAAGGTGGGAAGAGGAGGAAGTAGCGTTCTCCCCTCGGGA
CCTGTTCTGAAAAGCTGGGACTGTACTAAAAGTTAACTTGGGCGGTATAG
GTGGCCGCTGCCCTCAATGACATTTGACATTAAAGGGACGGGTTTGCCTT
CCCTCGAGTCAGTGCTGGACGAATTAATAGAGACACTGACTGGAAATTGG
TGTATTTTGAGAATTATAGAAATGATATAGCCAGAACCAGGAATAAGTTA
AGGCCTGCCTTTTTATCTTGACTTTGGATACTGCGTTATAGTAGATTGGT
TTCAACATTTTTCCACCCACTTTTATAACAAAGCTTGTGTATTTATCAAA
GCGGGGAGGGCGGGGGAAAATTATATCTACCTGTGATTTGCAAGTATTGT
AAATGGATGCAGGTACCTGGTGTTGCTTTTAACTTTTACTGTCGGTAGAG
GTTGCATGTGAAGCCGTAACCTGGGCACCAGTATGGAGTGTGCTTGAGAA
AAACAAAGTAGTTACAGTGGTTCTAAAAAAGACCCCTTGTTTTAGGAAAA
CTTTGGCCCTAACTATAATATTAAAAGTATAGTGCTTTTTGGTGTTGGTT
CAGGTGCTACATTTGGCCAATGCATTGCTTTAAGTGAT

Query= MSMg01no148_j23.b1 MSMg01no148_j23.b1 CHROMAT_FILE:
MSMg01no148_j23.b1 PHD_FILE: MSMg01no148_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:35 2005
         (666 letters)



>mm_chr1_9688679_9689740
          Length = 1062

 Score = 1205 bits (623), Expect = 0.0
 Identities = 654/667 (98%), Gaps = 8/667 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggaattcactaaatct--cttccgtgcgcactgctattctgagcttttctttttcttagt 59
           ||||||| ||||||||  |||  |||||||||||| ||||||||||||||||||||||||
Sbjct: 862 ggaattcgctaaatctccctt--gtgcgcactgctcttctgagcttttctttttcttagt 805

                                                                       
Query: 60  atcttctgaggacattgttacgttgttactatcgagtaaacttgatcctaaaccaatgtg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atcttctgaggacattgttacgttgttactatcgagtaaacttgatcctaaaccaatgtg 745

                                                                       
Query: 120 tcttagttactttgtatctcaagtattcatgtttgattctgattgtatcggcattgtaac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcttagttactttgtatctcaagtattcatgtttgattctgattgtatcggcattgtaac 685

                                                                       
Query: 180 aagtaggacacaatgttgttgttgttgtagaaagatgtgctaggatgtctttatgcacct 239
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aagtaggacacaa---tgttgttgttgtagaaagatgtgctaggatgtctttatgcacct 628

                                                                       
Query: 240 aacttttattttatgctattgtaatagctactcctaaattgtgtgtcataatcagatgac 299
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 627 aacttttattttatgctattgtaatagctactcctaaattgtgtggcataatcagatgac 568

                                                                       
Query: 300 aaaaaaaatctagtgtctcgattttcagtattaaggaaacctgaaaagtatttctcagaa 359
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 -aaaaaaatctagtgtctcgattttcagtattaaggaaacctgaaaagtatttctcagaa 509

                                                                       
Query: 360 tttccatttatctacacacacagcttcaaaatctaagagtcatattccctgagctgaaat 419
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tttccatttatctagatacacagcttcaaaatctaagagtcatattccctgagctgaaat 449

                                                                       
Query: 420 ttagtactgagagtcattcattgcagagtttgatttaaaataactacgcataaaatactt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttagtactgagagtcattcattgcagagtttgatttaaaataactacgcataaaatactt 389

                                                                       
Query: 480 ggctttattcatatattcttctatatgtaggttggttctgcagatatcaacataaattta 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggctttattcatatattcttctatatgtaggttggttctgcagatatcaacataaattta 329

                                                                       
Query: 540 attatgacataattactttatataaagtggctgcagaatagattgaacattgaagtggaa 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 attatgacataattactttatataaagtggctgcagaatagattgaacattgaagtggaa 269

                                                                       
Query: 600 caagtgtgcatatacgcatacacccacaggcacactaccttggtcttttatcattttgga 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 caagtgtgcatatacgcatacacccacaggcacactaccttggtcttttatcattttgga 209

                  
Query: 660 tgaggta 666
           |||||||
Sbjct: 208 tgaggta 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1062
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1052
Effective search space:   690112
Effective search space used:   690112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)