BAC Information

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BAC

Clone NameMSMg01-148K07
Chromosome1 (Build37)
Map Location 85,101,716 - 85,102,257
singlet/doubletsinglet
Overlap geneA530032D15Rik
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723
Downstream geneLOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148K07.T7 (MSMg01no148_k07.b1)MSMg01-148K07.TJ (MSMg01no148_k07.g1)
ACCAG351580AG351581
length735720
length of high quality
(start - end)
539 (44 - 582)247 (76 - 322)
definitionCHROMAT_FILE: MSMg01no148_k07.b1 PHD_FILE: MSMg01no148_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:36 2005CHROMAT_FILE: MSMg01no148_k07.g1 PHD_FILE: MSMg01no148_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:36 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACAGACAGTGCCAGGGTAGCAAAGATTAATGCAGCCATCCCTACGC
CTGTCAGATTGATAACCACAACAAAAATGTCTTCAAAGACAGAAACTGCA
AACACTCAGAGACAGATACCTCCACCTGCTTATATGAAAGGCACTGAGCC
AGTGATTAACCACCCTATTTATTCCCAAAAGACACAGCACACTGTTGGTA
TCACTAGTGGACTTGACCAAATGTCACAGGAGAAATGGTGCTTTCTTAGG
ACATCTGCAGGAGCAGAAGTATTCCTGACTGAGTCCCTGTTGGGGGCATC
ACACCTTCCTCTCATCTTTTCTATTTTTATTTTGAATTATGTATGTATGA
GTCTGTCTCAGTGTGCCCCCCCCACGCAAGTACAGTGTCCATGGAAGGCA
GAAAAGGCTGTCTGATCTGGAGTTGGCATGAGAGGCAGTTGGAAGCCCTA
GGATAGGTGCTGGGGACCCAACCCATGCCCACTACTAGGGCAATACGAGT
GCTTAAACCTGGGCCATCTCTCCTATCGTGTGTGTGTGTGTGCGTGTGTG
TGTGCTGCGTCGTTCCCTATAACTATTATTTATTTCTCTTCCCTATTCAA
TTTTTTTATATTTTTATCACCAATCCTACTACTCCCCCCCCCTTCCCACT
TTCTTCCCCTTTTTTTTTTCCAACTACACCTCCTC
AATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCCAAAAATACCTTGTGTCCTCAGTCTGATAAGACTT
TATTGAAAGCCTGGTTCATATGGAACGTGTGAGATATTTTCAGCCACTTC
AACTGTAGCAATCTCCCTTCTACACCTTGTGACACTCTCTTTCTAACTTG
TAACAGTTGCAGAAGGCATGAGTCATTACAATTCCTAGACATAGCCTCCC
CATAATATGCAAACCATTATCACAAGGTGCCGCCCAGTGTTCGTTTCCTC
CTCTGGGTATCCAGGCTCATTATATCCTTCTAAACGGGGGCAGGTGGGTG
CAATACAGGATCTTAGTTGACGCCGAGAGCACAAGAAACAAACAGCCTTC
TCAGGAGACAGCTCCTTCACCTGGAGCAGAAGAAAGGCCATTTATATCTT
TGGGGAATGGGTAGAGGCTTTTGAGGGGAATAGACATCATTGACCAGAGC
CAGGGTTCTGGGAATGCCTTATTTGCATGAAGAGGAATCCCAGGTGCTTG
CCAAATGTGACCTTATAAGGAGAGAGGAAGTTGAACCTGTAGCCTGTCTG
CTATGCTAATTGTCCACCTCAGGGTTGGCAGATGTCGGCAGTGTAAGGCT
ACGTGGACCTGTACGTGCAGGCCCAGTGCAGGACAGGCACAGTCCTATTC
CTGCTGGTCCCAAAATGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_k07.b1 MSMg01no148_k07.b1 CHROMAT_FILE:
MSMg01no148_k07.b1 PHD_FILE: MSMg01no148_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:36 2005
         (539 letters)



>mm_chr1_85101512_85102452
          Length = 941

 Score =  913 bits (472), Expect = 0.0
 Identities = 522/542 (96%), Gaps = 7/542 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacagacagtgccagggtagcaaagattaatgcagccatccctacgcctgtcag 64
           |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattccacagacagtgcaagggtagcaaagatcaatgcagccatccctacgcctgtcag 264

                                                                       
Query: 65  attgataaccacaacaaaaatgtcttcaaagacagaaactgcaaacactcagagacagat 124
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 attgataaccacaacaaaaatgtcttcaaagacagaaactgcaaatactcagagacagat 324

                                                                       
Query: 125 acctccacctgcttatatgaaaggcactgagccagtgattaaccaccctatttattccca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acctccacctgcttatatgaaaggcactgagccagtgattaaccaccctatttattccca 384

                                                                       
Query: 185 aaagacacagcacactgttggtatcactagtggacttgaccaaatgtcacaggagaaatg 244
           ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 aaagacacagcacactgctggtatcactagtggacttgatcaaatgtcacaggagaaatg 444

                                                                       
Query: 245 gtgctttcttaggacatctgcaggagcagaagtattcctgactgagtccctgttgggggc 304
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 445 gtgctttcttaggacatctgcaggagcagaagtagccctgactgagtccctgttgggggc 504

                                                                       
Query: 305 atcacac--cttcctctcatcttttctatttttattttgaattatgtatgtatgagtctg 362
           |||||||  |||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 atcacacaccttcatctcatcttttctatttttattttgaattatgcatgtatgagtctg 564

                                                                       
Query: 363 tctcagtgtgccccccccacgcaagtacagtgtc-----catggaaggcagaaaaggctg 417
           |||||||||||  ||  |||||||||||||||||     |||||||||||||||||||||
Sbjct: 565 tctcagtgtgcttcctgcacgcaagtacagtgtcgtgtccatggaaggcagaaaaggctg 624

                                                                       
Query: 418 tctgatctggagttggcatgagaggcagttggaagccctaggataggtgctggggaccca 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctgatctggagttggcatgagaggcagttggaagccctaggataggtgctggggaccca 684

                                                                       
Query: 478 acccatgcccactactagggcaatacgagtgcttaaacctgggccatctctcctatcgtg 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acccatgcccactactagggcaatacgagtgcttaaacctgggccatctctcctatcgtg 744

             
Query: 538 tg 539
           ||
Sbjct: 745 tg 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 941
Length adjustment: 10
Effective length of query: 529
Effective length of database: 931
Effective search space:   492499
Effective search space used:   492499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)