BAC Information

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BAC

Clone NameMSMg01-148K09
Chromosome1 (Build37)
Map Location 37,406,379 - 37,406,720
singlet/doubletsinglet
Overlap geneInpp4a
Upstream gene4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3
Downstream gene6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148K09.T7 (MSMg01no148_k09.b1)MSMg01-148K09.TJ (MSMg01no148_k09.g1)
ACCAG351584AG351585
length726726
length of high quality
(start - end)
246 (69 - 314)340 (74 - 413)
definitionCHROMAT_FILE: MSMg01no148_k09.b1 PHD_FILE: MSMg01no148_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:37 2005CHROMAT_FILE: MSMg01no148_k09.g1 PHD_FILE: MSMg01no148_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGCTGCGCGGAATT
CTGGGAGATTACAAAAAGCTGGGGTGTGGTTCATGAGGTTTCAGAGGAGA
ACAAGGACTCTTATCAGGAAGTGGGATGGGCCTGCTTGTGTGTTATTTTG
GCTCTAGAATTTTGGCTACATTCACACATGTTCTGTGTGGTTGAGTGTGA
AGATAGTGAATTAATTTGTTTAGACAAGGAAGTGCCAAGACAAGCTAGTA
TCCAGGCTGGTTCCGAGAATGAAGATCAGAGATCAGCATCACTGAAGAGA
AACCTCAACTGCACTGTTTTTTAAGGTTCAAAAGTCCTGCCAACACTGGG
TGCAGCTTGTGACAACACAAATTTGTTTGAACAGAAACATCTTAACTGAG
TGTGTGGCCAGCCCCCCCCAAGGGCTTCCTGGCTCCCTGAAAGTACATCC
CTGGAAGAGCCATTCCTATGGTAAGCGCATGGAAGCTGGTACAGCTGTGT
TCAGCGAGGGCAGACATCAGTCTGCTCAAGGGAAATGATCTTTGCCCCTT
TTTCCCGGATGGTACCCAGGTGTCTAGGCAGCCTGGGTTTTCTTATCTGT
ATGTGCTACCAAGAGCCATGTATTCTTGGTCATGTCCGACACCTGCTTAA
GGTTATCTACTTTAGCGCCAGTGTCTTTCGATGTGAATTGCGCTGCTTCC
CGTTTTTTTTCTCCACTGTTCCTCCT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGTGAGTCTCTCTAACCACCTTCCAA
CCCTGGCAAAAACTTGCCTAAGCCTAAGCTCATGGTTAGTATGGGAATTC
CAGCGGCTAACATTTGTTCCCAGCCCCCCTAGCCAGGCTCCCGCTGAGGC
TGGGCAATTTCCCATCCCCTAAGATCGCTGAGAGAATCCATACAGCCAGC
ATCTGGGGGATGGGTAGCACTGGAGAGCTAAAGGTTGGGGATTGCCATGT
GTACTGTCATGTGGGTAGCTCATCTGCAGAGGGAGCTGAGAAAGTCATCT
GTACTGCTGGCATTAGCGCACACATGCTCCTGCTCCAGTGTTCTGTCAGC
CTACTAGCTATGACACCCCCCCCCTCTGCTGAAGTTCGTCCATGTTGGGC
CTCCTTCCTGCAGTGCGGCGNTCTGGCTTTAGCTAGTAGTTTTCTCTTAT
CATTAGGAATACAGTCTTACTATGGACAGTCCTCATGGAAACTTCAAACC
ATGGGAAGTACCAAACCTTAGATATCTTGGTTTCTCCTAGACACATATAT
TCATGATAAAACTTGACTTTCATAACTCAGGCAAAGAAAGATACAACAAC
CCATAACAAGACATAATTGCAGCTTGCAATAGACAATGACTATCACGCAG
GATAAGATTTACATGACCACTAATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_k09.g1 MSMg01no148_k09.g1 CHROMAT_FILE:
MSMg01no148_k09.g1 PHD_FILE: MSMg01no148_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:37 2005
         (340 letters)



>mm_chr1_37406179_37406920
          Length = 742

 Score =  603 bits (312), Expect = e-177
 Identities = 334/342 (97%), Gaps = 2/342 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgagtctctctaaccaccttccaaccctggcaaaaacttgcctaagcctaagctcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgagtctctctaaccaccttccaaccctggcaaaaacttgcctaagcctaagctcat 260

                                                                       
Query: 61  ggttagtatgggaattccagcggctaacatttgttcccag--cccccctagccaggctcc 118
           |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||
Sbjct: 261 ggttagtatgggaattccagcggctaccatttgttcccagcccccccctagccaggctcc 320

                                                                       
Query: 119 cgctgaggctgggcaatttcccatcccctaagatcgctgagagaatccatacagccagca 178
           | ||||||||||| |||||||||||||||||||  |||| ||||||||||||||||||||
Sbjct: 321 ctctgaggctggggaatttcccatcccctaagagagctgggagaatccatacagccagca 380

                                                                       
Query: 179 tctgggggatgggtagcactggagagctaaaggttggggattgccatgtgtactgtcatg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgggggatgggtagcactggagagctaaaggttggggattgccatgtgtactgtcatg 440

                                                                       
Query: 239 tgggtagctcatctgcagagggagctgagaaagtcatctgtactgctggcattagcgcac 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggtagctcatctgcagagggagctgagaaagtcatctgtactgctggcattagcgcac 500

                                                     
Query: 299 acatgctcctgctccagtgttctgtcagcctactagctatga 340
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatgctcctgctccagtgttctgtcagcctactagctatga 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 742
Length adjustment: 9
Effective length of query: 331
Effective length of database: 733
Effective search space:   242623
Effective search space used:   242623
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)