Query= MSMg01no148_l04.b1 MSMg01no148_l04.b1 CHROMAT_FILE:
MSMg01no148_l04.b1 PHD_FILE: MSMg01no148_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:41 2005
(434 letters)
>mm_chr1_89541564_89542396
Length = 833
Score = 750 bits (388), Expect = 0.0
Identities = 420/436 (96%), Gaps = 11/436 (2%)
Strand = Plus / Minus
Query: 4 gaattcttggcatcccaatcaaaagaaaaggaaggaggcagacacacacataacttttaa 63
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gaattcttggcatcccaagaaaaagaaaaggaaggaggcagacacacacataacttttaa 574
Query: 64 atggtcccctgctaagaatttagacacagcatttgggaccacttggatacagacaacaca 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 atggt-ccctgctaagaatttagacacagcatttgggaccacttggatacagacaacaca 515
Query: 124 gtcctgggaacatgagtaatctagatttccatgttgccagagcccaggacatggcatatt 183
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gtcctgggaacatgagcaatctagatttccatgttgccagagcccaggacatggcatatt 455
Query: 184 tttatccttaattacacccccgagtggccctcccttctagcttctctctttactttccgt 243
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tttatccttaattacatccccgagtggccctcccttctagcttctctctttactttccgt 395
Query: 244 aaaactcaagttactctgggagacaggagtgacagcaggcagacaagtggatgtgcttgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aaaactcaagttactctgggagacaggagtgacagcaggcagacaagtggatgtgcttgg 335
Query: 304 ccctgggagccagcccagagaggagctgcctcaaggggcagcccagggcaactgtctgat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ccctgggagccagcccagagaggagctgcctcaaggggcagcccagggcaactgtctgat 275
Query: 364 tagccttgctccccccc-----ccccacgaccctggcatcatcccaggccattcgagtct 418
|||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct: 274 tagccttgct-----ccagatgctccacgaccctggcatcatcccaggccattcgagtct 220
Query: 419 tactggctgctgcaga 434
||||||||||||||||
Sbjct: 219 tactggctgctgcaga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 833
Length adjustment: 9
Effective length of query: 425
Effective length of database: 824
Effective search space: 350200
Effective search space used: 350200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_l04.g1 MSMg01no148_l04.g1 CHROMAT_FILE:
MSMg01no148_l04.g1 PHD_FILE: MSMg01no148_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:41 2005
(347 letters)
>mm_chr1_89390891_89391637
Length = 747
Score = 654 bits (338), Expect = 0.0
Identities = 344/346 (99%)
Strand = Plus / Plus
Query: 1 ctcgcttaggttgattgaaatgggacgatctaccctaatgtggatagcattactccatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcgcttaggttgattgaaatgggacgatctaccctaatgtggatagcattactccatgg 260
Query: 61 gttccagtcctgggctgagtaaaagggagaaagcaatctgaaccctggccctcacctttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttccagtcctgggctgagtaaaagggagaaagcaatctgaaccctggccctcacctttc 320
Query: 121 cttgcttcctgactgtggacacgccatgccagctactgtactctccaacatatgaactat 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 cttgcttcctgactgtggacacgccatgccagctactgtactccccaacatatgaactat 380
Query: 181 atattttcacactgatccaattaaactttagtttatttttgagacagggtctctctatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atattttcacactgatccaattaaactttagtttatttttgagacagggtctctctatac 440
Query: 241 agcctgctctaatatatgagaaaagaagcaaaaacaatggattacaagtcttatttccat 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcctgctctaagatatgagaaaagaagcaaaaacaatggattacaagtcttatttccat 500
Query: 301 gccggagcagactcaagtctgtggctgacctaaggtccctcccatc 346
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccggagcagactcaagtctgtggctgacctaaggtccctcccatc 546
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space: 249444
Effective search space used: 249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
