BAC Information

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BAC

Clone NameMSMg01-148L14
Chromosome1 (Build37)
Map Location 137,765,919 - 137,766,256
singlet/doubletsinglet
Overlap geneLOC100042477
Upstream genePpp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2
Downstream genePkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148L14.T7 (MSMg01no148_l14.b1)MSMg01-148L14.TJ (MSMg01no148_l14.g1)
ACCAG351637
length701701
length of high quality
(start - end)
---338 (72 - 409)
definitionCHROMAT_FILE: MSMg01no148_l14.b1 PHD_FILE: MSMg01no148_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:43 2005CHROMAT_FILE: MSMg01no148_l14.g1 PHD_FILE: MSMg01no148_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
X
CTCATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTGTTATACTGGATGTGGGTGCAGAAGT
GCCAAATGACCACAAAAGTCCTCCTTCAGCTGCCCTTAGCTAAGGGAGTG
GCAGGTCCTGTAGGGGACAGCCTGATGAGCATGAGAGGACCTCGGGTCCA
GGATTGGATAGAAAAGAACAAAAAAAGACAGGAAGGACACAGAACATCTA
GAAGGTGGGAAGGAAAAGGCTTCAAAGACCCAGAGGCCAAGTGTCACAGA
GCCCATGTCCACATAGGTCCACATGTCTGACCTTGAAGCCACTTCCGCTT
GTTCCTCTTGCAACTTACCTGGGGTGGGGCTAGAACCTCCACCACCACCA
GGTTTCAGATATTTCCCCCCCCCCTCTCTAAAGGGGCAGTGCCTTCTGCT
GACAGATATTGGGCACCAGTCTTCCTCTTTGAAGAGCCACACAATGACCC
TTTCTCTTTCAGATCCTTGGGGCATTGTTTACTATTTGGATCTGCCCTTC
ACCTTAGTAATCCAGGCAGAGCTCAAAGAATCACATTCCAGTCTTTAGCT
GGCATATAAAAAAACTGAGAGAAAGTGACCAGCTCCGTCACCTACGAAGT
TTACAGAAGACCCTTGCCTTGCGCTAGATCTAGGCTATTCCCGCCCCTGA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_l14.g1 MSMg01no148_l14.g1 CHROMAT_FILE:
MSMg01no148_l14.g1 PHD_FILE: MSMg01no148_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:43 2005
         (338 letters)



>mm_chr1_137765719_137766456
          Length = 738

 Score =  638 bits (330), Expect = 0.0
 Identities = 336/338 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgttatactggatgtgggtgcagaagtgccaaatgaccacaaaagtcctccttcagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 agtgttatactggatgtgggtgcagaagtgccaaatgaccacaaaagtcctccttcagct 479

                                                                       
Query: 61  gcccttagctaagggagtggcaggtcctgtaggggacagcctgatgagcatgagaggacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gcccttagctaagggagtggcaggtcctgtaggggacagcctgatgagcatgagaggacc 419

                                                                       
Query: 121 tcgggtccaggattggatagaaaagaacaaaaaaagacaggaaggacacagaacatctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tcgggtccaggattggatagaaaagaacaaaaaaagacaggaaggacacagaacatctag 359

                                                                       
Query: 181 aaggtgggaaggaaaaggcttcaaagacccagaggccaagtgtcacagagcccatgtcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aaggtgggaaggaaaaggcttcaaagacccagaggccaagtgtcacagagcccatgtcca 299

                                                                       
Query: 241 cataggtccacatgtctgaccttgaagccacttccgcttgttcctcttgcaacttacctg 300
           |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 298 cataggtccacatgcctgaccttgaagccacttctgcttgttcctcttgcaacttacctg 239

                                                 
Query: 301 gggtggggctagaacctccaccaccaccaggtttcaga 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gggtggggctagaacctccaccaccaccaggtttcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)