BAC Information

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BAC

Clone NameMSMg01-148O18
Chromosome1 (Build37)
Map Location 172,284,880 - 172,449,091
singlet/doubletdoublet
Overlap geneNos1ap
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik
Downstream geneLOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148O18.T7 (MSMg01no148_o18.b1)MSMg01-148O18.TJ (MSMg01no148_o18.g1)
ACCAG351785AG351786
length733770
length of high quality
(start - end)		671 (63 - 733)335 (72 - 406)
definitionCHROMAT_FILE: MSMg01no148_o18.b1 PHD_FILE: MSMg01no148_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:59 2005CHROMAT_FILE: MSMg01no148_o18.g1 PHD_FILE: MSMg01no148_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,284,880 - 172,285,550)(172,448,757 - 172,449,091)
sequence
GCGGCCGCTATACGACTCCTATAGTTCCAGAATCCGCGGAATTCTTTATA
AATCTGTCTGTGTGTGTGATGTGCACTCGCCCTTGTGTGCATGTGTACAT
ATGCATGTGTATACATATATTCATAGACACATACTCATTTTGTTGGCTCT
GTTTCCTGTAGAACCTTGATTAATACAGCTATATCCCTCAGTGTGTTAGC
ATCCTTCCTCCAGTGCCTCTCGTCTCCATTGAGGCTGCTGAATTTACATG
GCTGCACAGCATGTGGAAAGTCTTAAGCTACCTGCCAGGTTTCCCCAAAT
GTCTGTGTTTAGGCTCCTCCCCATCCCAGACTCACAGAGAAGCCTCTCCC
CTCTTCCTGGTCTCACCTTATCCTCACCCAGGTCTCACCCAGCCATTCCA
ACCCTGCCACACCCACAGACCCTGAGGCCAGAGGTCTGGATCTGCCAAAG
GCCTTTGAGTAAACTTCTCTCAGTCTTCATTCTTAATCTTTGAAATGATA
ATAGTAGAAACATTGTTTAGTGTGGCAATAATGTCCATATTAGACAATGA
CGAGTAACAGTAGACCATGTTTTACAAATATTTTAAAACTGTGGAAGTAA
GCCTAGATATATCAAATGAAGTACAAAAAAAAACCCATATTCTTTGCTCT
CCCAATATCATTATATTTAGAGGTAGGACAAGATAGCTCGAATATAGAAC
TGTATTACTCTGTTTTTCTATTAATATAATGAG

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGCAGACACCAGGGTAAGGCCTTTCCT
CTTGTCTCTTCTTCAAGCAGAGATTCTCCCATAAGGACTTAGGGCAAGTA
TGCATTCATTCCTGTGAGACTGCAGTCAGTCAATTGAGGTTTGAACATCT
TCTCTGTGCCTTGACCTATGGTAGGTATGGTCAACCCATGGATACATGTA
TTTAATTCTGTGTGGATGCTACATAAGAGAGTTGTAGGGGTTACGGAGTC
TTGGTGTAAGAGTCCACCTTCCTTATAAGTCAGCAGTGGAAAGGCAGAGA
TTCAGTAGAAATAGGCAGAGAGAGAAAGAGAGGAGAGAGAGAGGGAGGGA
GGGAGGATTTTTTTTCTCCCCCCCCCCCCCTCTTTTTTTTTNTTCTTCCC
CTCCCTCTCTTTCTCCTTTCTCCCCTTTTCTCCCCTTCCCTTCTCTCTCT
TTCTTTCTTTTCCCCCTCTTTCTTTTCCCCCTCTTCTCTCTTTTTTTCTT
CTCTCTCCTTCTCCTTCCTCTCTCCTTTTTCTCCTCTCCCTCCTTCTCCT
CCTTTCTTCTTCCCCTTCCCCTTTCCCTTTTTCCCCCCTCTCCCCCTTTT
CTTCCTTTTCTCCTTCCTATTCTCTCTCTCCCTCCTCTTCTATCTCCTTC
CCCTACTTCCTACTTTTTTTCCACTCCCCCCCACCCCCTATTCACCCTTC
TCTATTTTTCCCACCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_o18.b1 MSMg01no148_o18.b1 CHROMAT_FILE:
MSMg01no148_o18.b1 PHD_FILE: MSMg01no148_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:59 2005
         (671 letters)



>mm_chr1_172284680_172285750
          Length = 1071

 Score = 1266 bits (655), Expect = 0.0
 Identities = 667/671 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtgatgtgcactcgcccttgtgtgcatgtgtacatatgcatgtgtatacatatattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtgatgtgcactcgcccttgtgtgcatgtgtacatatgcatgtgtatacatatattc 260

                                                                       
Query: 61  atagacacatactcattttgttggctctgtttcctgtagaaccttgattaatacagctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagacacatactcattttgttggctctgtttcctgtagaaccttgattaatacagctat 320

                                                                       
Query: 121 atccctcagtgtgttagcatccttcctccagtgcctctcgtctccattgaggctgctgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atccctcagtgtgttagcatccttcctccagtgcctctcgtctccattgaggctgctgaa 380

                                                                       
Query: 181 tttacatggctgcacagcatgtggaaagtcttaagctacctgccaggtttccccaaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttacatggctgcacagcatgtggaaagtcttaagctacctgccaggtttccccaaatgt 440

                                                                       
Query: 241 ctgtgtttaggctcctccccatcccagactcacagagaagcctctcccctcttcctggtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtgtttaggctcctccccatcccagactcacagagaagcctctcccctcttcctggtc 500

                                                                       
Query: 301 tcaccttatcctcacccaggtctcacccagccattccaaccctgccacacccacagaccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||
Sbjct: 501 tcaccttatcctcacccaggtctcacccagccattccaaccctgccataggcacagaccc 560

                                                                       
Query: 361 tgaggccagaggtctggatctgccaaaggcctttgagtaaacttctctcagtcttcattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaggccagaggtctggatctgccaaaggcctttgagtaaacttctctcagtcttcattc 620

                                                                       
Query: 421 ttaatctttgaaatgataatagtagaaacattgtttagtgtggcaataatgtccatatta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaatctttgaaatgataatagtagaaacattgtttagtgtggcaataatgtccatatta 680

                                                                       
Query: 481 gacaatgacgagtaacagtagaccatgttttacaaatattttaaaactgtggaagtaagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacaatgacgagtaacagtagaccatgttttacaaatattttaaaactgtggaagtaagc 740

                                                                       
Query: 541 ctagatatatcaaatgaagtacaaaaaaaaacccatattctttgctctcccaatatcatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctagatatatcaaatgaagtacaaaaaaaaacccatattctttgctctcccaatatcatt 800

                                                                       
Query: 601 atatttagaggtaggacaagatagctcgaatatagaactgtattactctgtttttctatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 801 atatttagaggtaggacaagatagctcgaatatagaactgtattactctgtttttttatt 860

                      
Query: 661 aatataatgag 671
           |||||||||||
Sbjct: 861 aatataatgag 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no148_o18.g1 MSMg01no148_o18.g1 CHROMAT_FILE:
MSMg01no148_o18.g1 PHD_FILE: MSMg01no148_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:59 2005
         (335 letters)



>mm_chr1_172448597_172449331
          Length = 735

 Score =  640 bits (331), Expect = 0.0
 Identities = 334/335 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcagacaccagggtaaggcctttcctcttgtctcttcttcaagcagagattctccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 caggcagacaccagggtaaggcctttcctcttgtctcttcttcaagcagagattctccca 436

                                                                       
Query: 61  taaggacttagggcaagtatgcattcattcctgtgagactgcagtcagtcaattgaggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 taaggacttagggcaagtatgcattcattcctgtgagactgcagtcagtcaattgaggtt 376

                                                                       
Query: 121 tgaacatcttctctgtgccttgacctatggtaggtatggtcaacccatggatacatgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgaacatcttctctgtgccttgacctatggtaggtatggtcaacccatggatacatgtat 316

                                                                       
Query: 181 ttaattctgtgtggatgctacataagagagttgtaggggttacggagtcttggtgtaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttaattctgtgtggatgctacataagagagttgtaggggttacggagtcttggtgtaaga 256

                                                                       
Query: 241 gtccaccttccttataagtcagcagtggaaaggcagagattcagtagaaataggcagaga 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gtccaccttccttagaagtcagcagtggaaaggcagagattcagtagaaataggcagaga 196

                                              
Query: 301 gagaaagagaggagagagagagggagggagggagg 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 195 gagaaagagaggagagagagagggagggagggagg 161


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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