BAC Information

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BAC

Clone NameMSMg01-149G09
Chromosome1 (Build37)
Map Location 156,071,729 - 156,072,051
singlet/doubletsinglet
Overlap genenone
Upstream geneLamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneCacna1e, LOC671336, Ier5, Mr1, Stx6, EG667867, BC034090
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149G09.T7 (MSMg01no149_g09.b1)MSMg01-149G09.TJ (MSMg01no149_g09.g1)
ACCAG352127AG352128
length714718
length of high quality
(start - end)
233 (45 - 277)324 (73 - 396)
definitionCHROMAT_FILE: MSMg01no149_g09.b1 PHD_FILE: MSMg01no149_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:39 2005CHROMAT_FILE: MSMg01no149_g09.g1 PHD_FILE: MSMg01no149_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATAATTTGCGGCGCTAAACGACTCCTAGATCCAGAGGATGCGCGGAA
TTCTCTGTTTTTCTTGTACCCCATTTTTTAATTGGATTATTTGGTTTACT
GGTTTTTAACTTCTTGAATTCTTTATAGGTTTTAGATGTTAGTTCTTTGT
CTGATGTAGGATTGGTGAGGATACTCTCTGGCTCTGTAGGCTGACATTTT
GTCCTTGACAGTGGCTTTCACCTTCTAGAAGCTTTCCTGTTTCACAAGGG
CCCATTTATTAATTGTGGATCTTAGAGCCTGAGCCACCGATGTTCTGTTC
AAGAACTTGTCTCCAGTGTTATTGCATTCAAGGGCACGTCCCACTTTCTC
TTCTATCAGAGTTAGTGCATGCAGTTTTATGTTGAGGTCTTTCATCCACT
TGACTTGAATTTTGCGTAGGGTGGTTAAATACAAACCTATTTGCATTCTT
CGACATTCACACATTCCGTTAGACCCGTACCATTTGTTGAAGATGCCTTT
CCCCCCCGTTGGTTAGATTTGATTCCTTTGTCTAAACTCCCGTGTCTGCA
CGCGTGTGGGTCTATTTCTGCATCTTTGATTCGAATCCCTTGATCACACT
GTCCTTACGTCTTGCTATAAAGCCACTAAATCCGAAAAACCAACCGAAAT
GACTTATTCTCTAGATAATTGACCCTTTCCCAAATTCAATTCAGATGGGC
CACCCCCTTTAAAT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTTCCGAAATTCTCAGAAACAGTGAACCAAAGTACAATTG
CTTTTCTTTACTTTGTTCTTTAAGCTCTTTTAAGTTGTTCTTTCAGGAAT
TTTGGTCACAGATACACAAAATGGATTAACAAAGTCCACAGATAACAGAC
AAGTGGGGTCGTGGCTATGAATAACCTGATCTTGAACTTCTTACTTTTGG
ACCTAGTTCGTGGGAGGTGTTTACCCTTGTGACAGTGGTAAAATGCTGAC
AGAAACAACTTATAGGAGAATTAGGCTTATTTCTGCTCTCAGTTTCAGTC
TATCACAACAGGGAAGGTACGTTGGAAGCCCTCAGCTCTGGGCAACTGGA
GCATATGGTGGTGGTAGACCAGGAAGCATAGAGTGCTGGAATCTAGGTGT
ATGCAGCAGCTGTCAAAGGTCCACCCCCCTGGTGACTACCTCTTTTAATG
AAGCCCCATCTCCCAAAGGTTTCTCAAACAGAGTCCACCAGTCACCCAAA
GATCTTTCCCAGGTTTTTATTCTCTACTGGAACTCTGAAGTGCTGCCCCC
TCACCAACTCACATCCCATCTTCTTCTAGTAACACCCACATTCTTTCACA
TCCAAGTTAAAAGAAGTTTTTCCTAGGTACCTTTCCCATGGGATCTGTTT
TATCACTAACCAGCGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_g09.g1 MSMg01no149_g09.g1 CHROMAT_FILE:
MSMg01no149_g09.g1 PHD_FILE: MSMg01no149_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:39 2005
         (324 letters)



>mm_chr1_156071529_156072251
          Length = 723

 Score =  611 bits (316), Expect = e-179
 Identities = 322/324 (99%), Gaps = 1/324 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagaaacagtgaaccaaagtacaattgcttttctttactttgttctttaagctctttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tcagaaacagtgaaccaaagtacaattgcttttctttactttgttctttaagctctttta 464

                                                                       
Query: 61  agttgttctttcaggaattttggtcacagatacacaaaatggattaacaaagtccacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agttgttctttcaggaattttggtcacagatacacaaaatggattaacaaagtccacaga 404

                                                                       
Query: 121 taacagacaagtggggtcgtggctatgaataacctgatcttgaacttcttacttttggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 taacagacaagtggggtcgtggctatgaataacctgatcttgaacttcttacttttggac 344

                                                                       
Query: 181 ctagttcgtgggaggtgtttacccttgtgacagtggtaaaatgctgacagaaacaactta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctagttcgtgggaggtgtttacccttgtgacagtggtaaaatgctgacagaaacaactta 284

                                                                       
Query: 241 taggagaattaggcttatttctgctctcagtttcagtctatcacaacagggaaggtacgt 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 taggagaa-gaggcttatttctgctctcagtttcagtctatcacaacagggaaggtacgt 225

                                   
Query: 301 tggaagccctcagctctgggcaac 324
           ||||||||||||||||||||||||
Sbjct: 224 tggaagccctcagctctgggcaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 723
Length adjustment: 9
Effective length of query: 315
Effective length of database: 714
Effective search space:   224910
Effective search space used:   224910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)