BAC Information

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BAC

Clone NameMSMg01-149K03
Chromosome1 (Build37)
Map Location 24,245,254 - 24,404,495
singlet/doubletdoublet
Overlap geneCol9a1, Col19a1
Upstream geneEG623356, Ogfrl1, LOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808
Downstream geneLOC100040475, LOC665829, Lmbrd1, 4930472D16Rik, LOC669171, Bai3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149K03.T7 (MSMg01no149_k03.b1)MSMg01-149K03.TJ (MSMg01no149_k03.g1)
ACCAG352296AG352297
length701701
length of high quality
(start - end)
465 (56 - 520)512 (77 - 588)
definitionCHROMAT_FILE: MSMg01no149_k03.b1 PHD_FILE: MSMg01no149_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:58 2005CHROMAT_FILE: MSMg01no149_k03.g1 PHD_FILE: MSMg01no149_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,404,041 - 24,404,495)(24,245,254 - 24,245,765)
sequence
NCCAATCATAATTGCGGCGCTAAACGACTCCTATAGTCGNAAATCCGCGG
AATCATCCTTGTATCCACTTAGATGCAACCGTAGCAGACAACATAGGAGG
AAGGAGGACAAGAACAGACCTTAGATATCTGCACTTCCTTAAAGTTAGCC
CTATGTTTGCTTTCTTCAAAGCCTGGACTGATGTCTGCCTAGTCCAAAGG
AACTAGGAGAATTAAGAGGAGGCTCCTTTCTCTCTCAAGTGACAGGAGCT
GGGAAACCATCCTTGTAGTGTAAGTGGAGTTGTTGAAGCGTGGTGCTTAG
GAACCCATAAGCAAGCTGTGGGGTGTACAGAAGTTGAATATGCTTGTTTG
GAACCTTTAGTAACAATGGACTATAACTGTATAGTTTCAGCCTGTGATCA
CTGGACTCTCCTGGCAACAATCCTTCAAGGAGTAGCATTGAGCTCATGGG
GAGTTACAGCTTCTGTTGGCTTCCTCTGCATCATAAAACAGCAGGTCCAC
AAACTTGTGGCTTTTATTAAAGTAAAGGATCAAGACCGCATGCCCTGAGA
AAAATGCGATCATTTGCTTCTGTGGACTTTTATGGTTTATGTCTTAGCTT
ATTTACCTATTTAAATTATTAGCCTATTCTTCATTATATATCTTGTCCTC
ATGTTAAAGATGGAACAACAACACGATACTTTTTCCTTAAATTCCTTTAC
A
ATTCATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAGTAGTCATATTTAAAGAGTTTT
TTAAACTGTTGGATAAAAATGTGTTTCCCACTCAGGTTCCCTTTCACACC
CTAAAGCTTTAAAAACAGTGTTGCACTAGAGCATTTGTCTCAGAGCATTT
TAATGGGATGGATTTTCTTGCCTTCCACAGCTTCAGCTACTGACCCTGAA
TGTATGTGAGAAGCCCCCAGAGTTATTAAAACTTTAAGACAAGCTGTGCC
CATTCCCAAGGAAGGTTACATTTAATGATTGTTATCTGTTCCAACCATGA
AAGTAAACTGGAGGGGAAGGATCTATTAGAAGCCATGGATTCTCATGATA
TTTCAGGCTATAGAATTGCTTTGAACTAAAAAGGCTTTTAGTTTTGATGC
TTCGTCTCAAAGAGTGTCTGAACCCTAACTTTGAATGATGGGTTTTGAAA
AGGTCCAAGACAACACTTCCACCTATGATAAGAACTCATTTTCTTTGACT
CCTGTGGGTTTCACCTAGTACCAGATAGGATTCAGGGGCACTCCAAGTTA
CTGGACCACCATGCCTCTCCCAGCCCTGGAATTTAACCCTCTTGCCACTG
CCTCTCAAAACAGAACGGCCAGAGAGATGCAAGGCTAAGCTCAGGAAAAG
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_k03.b1 MSMg01no149_k03.b1 CHROMAT_FILE:
MSMg01no149_k03.b1 PHD_FILE: MSMg01no149_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:58 2005
         (465 letters)



>mm_chr1_24403831_24404695
          Length = 865

 Score =  880 bits (455), Expect = 0.0
 Identities = 455/455 (100%)
 Strand = Plus / Minus

                                                                       
Query: 11  cacttagatgcaaccgtagcagacaacataggaggaaggaggacaagaacagaccttaga 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cacttagatgcaaccgtagcagacaacataggaggaaggaggacaagaacagaccttaga 606

                                                                       
Query: 71  tatctgcacttccttaaagttagccctatgtttgctttcttcaaagcctggactgatgtc 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tatctgcacttccttaaagttagccctatgtttgctttcttcaaagcctggactgatgtc 546

                                                                       
Query: 131 tgcctagtccaaaggaactaggagaattaagaggaggctcctttctctctcaagtgacag 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgcctagtccaaaggaactaggagaattaagaggaggctcctttctctctcaagtgacag 486

                                                                       
Query: 191 gagctgggaaaccatccttgtagtgtaagtggagttgttgaagcgtggtgcttaggaacc 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gagctgggaaaccatccttgtagtgtaagtggagttgttgaagcgtggtgcttaggaacc 426

                                                                       
Query: 251 cataagcaagctgtggggtgtacagaagttgaatatgcttgtttggaacctttagtaaca 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cataagcaagctgtggggtgtacagaagttgaatatgcttgtttggaacctttagtaaca 366

                                                                       
Query: 311 atggactataactgtatagtttcagcctgtgatcactggactctcctggcaacaatcctt 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atggactataactgtatagtttcagcctgtgatcactggactctcctggcaacaatcctt 306

                                                                       
Query: 371 caaggagtagcattgagctcatggggagttacagcttctgttggcttcctctgcatcata 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 caaggagtagcattgagctcatggggagttacagcttctgttggcttcctctgcatcata 246

                                              
Query: 431 aaacagcaggtccacaaacttgtggcttttattaa 465
           |||||||||||||||||||||||||||||||||||
Sbjct: 245 aaacagcaggtccacaaacttgtggcttttattaa 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no149_k03.g1 MSMg01no149_k03.g1 CHROMAT_FILE:
MSMg01no149_k03.g1 PHD_FILE: MSMg01no149_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:58 2005
         (512 letters)



>mm_chr1_24245054_24245965
          Length = 912

 Score =  936 bits (484), Expect = 0.0
 Identities = 505/512 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtagtcatatttaaagagttttttaaactgttggataaaaatgtgtttcccactcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtagtcatatttaaagagttttttaaactgttggataaaaatgtgtttcccactcagg 260

                                                                       
Query: 61  ttccctttcacaccctaaagctttaaaaacagtgttgcactagagcatttgtctcagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ttccctttcacaccctaaagctttaaaaacagtgttgcactagagcatttgcctcagagc 320

                                                                       
Query: 121 attttaatgggatggattttcttgccttccacagcttcagctactgaccctgaatgtatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 attttaatgggatggattttcttgccttccacagcttcagctactgatcctgaatgtatg 380

                                                                       
Query: 181 tgagaagcccccagagttattaaaactttaagacaagctgtgcccattcccaaggaaggt 240
           |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 tgagaagcccccagggttattaaaactttaagacaaactgtgcccattcccaaggaaggt 440

                                                                       
Query: 241 tacatttaatgattgttatctgttccaaccatgaaagtaaactggaggggaaggatctat 300
           ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tacttttaatgattgttatctgttccaagcatgaaagtaaactggaggggaaggatctat 500

                                                                       
Query: 301 tagaagccatggattctcatgatatttcaggctatagaattgctttgaactaaaaaggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagaagccatggattctcatgatatttcaggctatagaattgctttgaactaaaaaggct 560

                                                                       
Query: 361 tttagttttgatgcttcgtctcaaagagtgtctgaaccctaactttgaatgatgggtttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttagttttgatgcttcgtctcaaagagtgtctgaaccctaactttgaatgatgggtttt 620

                                                                       
Query: 421 gaaaaggtccaagacaacacttccacctatgataagaactcattttctttgactcctgtg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 gaaaaggtccaagacaacacttccacctatgataagaactcattttctttgacttctgtg 680

                                           
Query: 481 ggtttcacctagtaccagataggattcagggg 512
           ||||||||||||||||||||||||||||||||
Sbjct: 681 ggtttcacctagtaccagataggattcagggg 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)