BAC Information

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BAC

Clone NameMSMg01-149L19
Chromosome1 (Build37)
Map Location 172,694,765 - 172,844,103
singlet/doubletdoublet
Overlap geneAtf6, Dusp12, Fcrlb
Upstream geneLOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
Downstream geneFcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149L19.T7 (MSMg01no149_l19.b1)MSMg01-149L19.TJ (MSMg01no149_l19.g1)
ACCAG352376AG352377
length715693
length of high quality
(start - end)		259 (68 - 326)471 (74 - 544)
definitionCHROMAT_FILE: MSMg01no149_l19.b1 PHD_FILE: MSMg01no149_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:06 2005CHROMAT_FILE: MSMg01no149_l19.g1 PHD_FILE: MSMg01no149_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,843,848 - 172,844,103)(172,694,765 - 172,695,235)
sequence
ATCATAATTTGCGGCGCTAAACGACTCCTATATCCAGAGAATCCGCGGAA
TTCTCAGAGGATACCTGGTGCCTCAGCAAAACTGGAGGATGGGATCTTGG
AGAGCTGACTGTATCTGACCACTGATCTCCTTCCTGCTAGGGTTCCAAGG
AAGGCAGATGTCCTGGTTCTAAACAGCCGCCAGTGCAGACAGGGCAGAGC
TCAGGGAGACATACTATCAGGTTGGAAACTTCATTAAATATTTACTTGAA
ACTTGGGCTCTTCATTGCTCAGGTGTGGTCACGTGGCTCAGAGGAGCGAA
GCAGAGAGGTCGGATTTGAGAAGTCTCGAAGGTCAACGCGAGGGGGGGNN
TCCTCTCTCCCAGGCCATAGCCCTGTGGACTAGGACTTGGCTGGGGAAGG
GTGTTAGGGTCAGACCGAAGGCATAAAGGAGAGACGGGGTNNTGAAGGTA
CCATAGCTCGAGATCATTTGTGGTGGGGAAGGAAAGACATCTTTTCAATT
CTACAACTGTCTTTAAAATAAACAACTTCTTCCTTCCCTACTTTCTTTGC
GCCCTCCTCCTCCCTTCTTTTTTTTCATTGTGTTGATCTATCCTCTTTTT
TTTTGTTCACTCAATAACTTGTCAAAATACTTCCCCCCAAATCATCCCTA
CATCNCTTCTTCTCCTCTCTTTCCCCTTCTTTATTTCTTCCCTCATCCTT
ACGATTTCTTACATC

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCAATGTAACTTAATTTCTTCTACT
GCTGGAGAGCACTAAAGTGCAGGAAAAACCCCAGTCTGATCTGGAAGATA
GTCCATTTTGGGACTTGGCTTTGTGATGAATGAGTGGTGGGGTGCTGTAG
AATTTCTTCCTATAAATAATAAGGGCAAAACCACCTTTTTATGTCTCTGA
AATATAAAGTGGAAACTCTATCAAGAAACTGCAAAATAAACTTTACAAGC
AGTATCACTTGAGGCAAATATTACTTTCAATATGCCATTGTTGTAAAAGT
TTATGGAACACGAGATTAAATAAGAAGCTAATATGGCCAAACTGTGAGAG
GAATTTAATTCTCCTGATTGTAGATTTACTTCCTGTTCATGAACTCATTC
AAGGTTTTCACTGATAAGAAACAATAGCACTTGACATTCTCCACACAAAA
GACACTATATGAGCTTACTGCTGAAATATTGTATGTTTAAATGATAAAAT
TCAGCTATTGAGTTGAAGATTCATCAAAAAGGGCAAAAAAAAAAAACAAA
CTAAAAAAACAAACCAAACAAAACCCCCAAATGAATAACCATCCAATATA
GAAGACTGGCCCAGTTAGGGTTCCATTGCTACCAAGAGACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_l19.b1 MSMg01no149_l19.b1 CHROMAT_FILE:
MSMg01no149_l19.b1 PHD_FILE: MSMg01no149_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:06 2005
         (259 letters)



>mm_chr1_172843648_172844306
          Length = 659

 Score =  495 bits (256), Expect = e-144
 Identities = 256/256 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgcctcagcaaaactggaggatgggatcttggagagctgactgtatctgaccactgatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gtgcctcagcaaaactggaggatgggatcttggagagctgactgtatctgaccactgatc 397

                                                                       
Query: 61  tccttcctgctagggttccaaggaaggcagatgtcctggttctaaacagccgccagtgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tccttcctgctagggttccaaggaaggcagatgtcctggttctaaacagccgccagtgca 337

                                                                       
Query: 121 gacagggcagagctcagggagacatactatcaggttggaaacttcattaaatatttactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gacagggcagagctcagggagacatactatcaggttggaaacttcattaaatatttactt 277

                                                                       
Query: 181 gaaacttgggctcttcattgctcaggtgtggtcacgtggctcagaggagcgaagcagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gaaacttgggctcttcattgctcaggtgtggtcacgtggctcagaggagcgaagcagaga 217

                           
Query: 241 ggtcggatttgagaag 256
           ||||||||||||||||
Sbjct: 216 ggtcggatttgagaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no149_l19.g1 MSMg01no149_l19.g1 CHROMAT_FILE:
MSMg01no149_l19.g1 PHD_FILE: MSMg01no149_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:06 2005
         (471 letters)



>mm_chr1_172694565_172695435
          Length = 871

 Score =  911 bits (471), Expect = 0.0
 Identities = 471/471 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcaatgtaacttaatttcttctactgctggagagcactaaagtgcaggaaaaacccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcaatgtaacttaatttcttctactgctggagagcactaaagtgcaggaaaaacccca 260

                                                                       
Query: 61  gtctgatctggaagatagtccattttgggacttggctttgtgatgaatgagtggtggggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctgatctggaagatagtccattttgggacttggctttgtgatgaatgagtggtggggt 320

                                                                       
Query: 121 gctgtagaatttcttcctataaataataagggcaaaaccacctttttatgtctctgaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgtagaatttcttcctataaataataagggcaaaaccacctttttatgtctctgaaat 380

                                                                       
Query: 181 ataaagtggaaactctatcaagaaactgcaaaataaactttacaagcagtatcacttgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaagtggaaactctatcaagaaactgcaaaataaactttacaagcagtatcacttgag 440

                                                                       
Query: 241 gcaaatattactttcaatatgccattgttgtaaaagtttatggaacacgagattaaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaatattactttcaatatgccattgttgtaaaagtttatggaacacgagattaaataa 500

                                                                       
Query: 301 gaagctaatatggccaaactgtgagaggaatttaattctcctgattgtagatttacttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagctaatatggccaaactgtgagaggaatttaattctcctgattgtagatttacttcc 560

                                                                       
Query: 361 tgttcatgaactcattcaaggttttcactgataagaaacaatagcacttgacattctcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttcatgaactcattcaaggttttcactgataagaaacaatagcacttgacattctcca 620

                                                              
Query: 421 cacaaaagacactatatgagcttactgctgaaatattgtatgtttaaatga 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacaaaagacactatatgagcttactgctgaaatattgtatgtttaaatga 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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