BAC Information

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BAC

Clone NameMSMg01-149M08
Chromosome1 (Build37)
Map Location 138,748,687 - 138,749,123
singlet/doubletsinglet
Overlap geneNr5a2
Upstream geneTnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818
Downstream geneRnu7-ps3, LOC100042567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149M08.T7 (MSMg01no149_m08.b1)MSMg01-149M08.TJ (MSMg01no149_m08.g1)
ACCAG352401
length684691
length of high quality
(start - end)
---433 (79 - 511)
definitionCHROMAT_FILE: MSMg01no149_m08.b1 PHD_FILE: MSMg01no149_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:09 2005CHROMAT_FILE: MSMg01no149_m08.g1 PHD_FILE: MSMg01no149_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTGCTCTCACCGCTTTAGTGATCTACTGTACTATGGACCC
GTGACTGACATCTTCCTTTCCTCCCCCGGATGCTTCGGCAAATGGCGTTT
CATCGCAATGCTAGAATACCTAACTAAGGCCTACCCATCTCAGAATGAGA
AAGGAGTACGAGATGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGCC
NNNNCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTTTCTCAGACTTGTAGT
CTGGCCAGACATCTGTAATTGGATGGATTGTGGTCCAGGACAATACAGGT
TTAGAACACTGGAGACTGGGCTGAGTTGTAAACACTGACGCTCCTGCTCC
CCAGCATCCGTGTGGAGAGGATATAACTGTGGGTAACGCCAGGTTTCTTT
GGCAGTCTCCAGCATGGCACTGGCAGAGCCAGTGTTGATGCTGAGTATGA
GAGAGCATGGGAAAGCAGAACGTCCCATGTGAGAGACAGTCCAAAGGGTT
TGAAAAACGCACACATACCCCATGTTACAGGCAAACCACCCGGCAAGACT
TCCGATTGACTCTGTTTACCCAGACAGCACTATACTTAGTGGAGTTGGGG
TGTGTGTTGTTTGCTGTTAAGAAACAAACAATTCTATGTAAAACAAAACT
TGCTGCGAATTCAATGTTTAAGAACAGCAGCATGCCAACCTGTGGGGGGT
GGGGAAGGAGGGAGAGAGACAGAGACATCTTCCCCCTTTTCCCTTTTTCA
CCCCTTCTCCCTTTCCCCCTTTTTTCTCATTCCACCATTTTAATTTTCTC
TAGTATCTTTTCACCCTTCTCCCCTTTCTCCTCTCCCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_m08.g1 MSMg01no149_m08.g1 CHROMAT_FILE:
MSMg01no149_m08.g1 PHD_FILE: MSMg01no149_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:09 2005
         (433 letters)



>mm_chr1_138748487_138749323
          Length = 837

 Score =  787 bits (407), Expect = 0.0
 Identities = 428/437 (97%), Gaps = 4/437 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcctttctcagacttgtagtctggccagacatctgtaattggatggattgtggtccag 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 637 tttcctttctcagacttgtagtctagccagacatctgtaattggatggattgtggtccag 578

                                                                       
Query: 61  gacaatacaggtttagaacactggagactgggctgagttgtaaacactgacgctcctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 577 gacaatacaggtttagaacactggagactgggctgagttgtaaacactgacactcctgct 518

                                                                       
Query: 121 ccccagcatccgtgtggagagg----atataactgtgggtaacgccaggtttctttggca 176
           ||||||||||||||||||||||    |||||||||||||||| |||||||||||||||||
Sbjct: 517 ccccagcatccgtgtggagaggatatatataactgtgggtaaagccaggtttctttggca 458

                                                                       
Query: 177 gtctccagcatggcactggcagagccagtgttgatgctgagtatgagagagcatgggaaa 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gtctccagcatggcactggcagagccagtgttgatgctgagtatgagagagcatgggaaa 398

                                                                       
Query: 237 gcagaacgtcccatgtgagagacagtccaaagggtttgaaaaacgcacacataccccatg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gcagaacgtcccatgtgagagacagtccaaagggtttgaaaaacgcacacataccccatg 338

                                                                       
Query: 297 ttacaggcaaaccacccggcaagacttccgattgactctgtttacccagacagcactata 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttacaggcaaaccacccggcaagacttccgattgactctgtttacccagacagcactata 278

                                                                       
Query: 357 cttagtggagttggggtgtgtgttgtttgctgttaagaaacaaacaattctatgtaaaac 416
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 277 cttagtggagttggggtgtgtgttgtttgttgttaagaaacaaacgattctatgtaaaac 218

                            
Query: 417 aaaacttgctgcgaatt 433
           |||||||||||||||||
Sbjct: 217 aaaacttgctgcgaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 837
Length adjustment: 9
Effective length of query: 424
Effective length of database: 828
Effective search space:   351072
Effective search space used:   351072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)