BAC Information

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BAC

Clone NameMSMg01-150A18
Chromosome1 (Build37)
Map Location 134,993,584 - 134,993,730
singlet/doubletsinglet
Overlap genePik3c2b
Upstream genePctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636
Downstream genePpp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150A18.T7 (MSMg01no150_a18.b1)MSMg01-150A18.TJ (MSMg01no150_a18.g1)
ACCAG352595AG352596
length722807
length of high quality
(start - end)
147 (73 - 219)244 (73 - 316)
definitionCHROMAT_FILE: MSMg01no150_a18.b1 PHD_FILE: MSMg01no150_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:30 2005CHROMAT_FILE: MSMg01no150_a18.g1 PHD_FILE: MSMg01no150_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGTACGGAGCCGCGGAAN
TNATGCTTTTCCCCGCCCCACGCCTCCTGAATGCTGGGATTACGAGAGTG
AGACGAGGTACTAGTGGTTTCTTATGGTAATGCGCAGAAGAAAAGAACTT
GACTATATTTAGTATACAGAATCCACATTATATGAGTGAGACCCTCCAGT
AAGGAGGAGGACTATACATGAATCACGATTCATACCTGCAGGCTCAGGGA
GGTGAGAAGAGAGTGTAGTCCTTACTGGCAGCCATTCATACAGTATTTTT
GTGACCTTCCAGAGACTTTTTCTTTAAAGAATGCCTGTGACGGGCAGGTT
ACTAGAGATGGTAAGTCAGGGTTGGAATTGGATAGGCTATGTTCCTATTC
AAGTGGTTTCCTCCCCCCCATAGATTTTTTTTTCTTTCTAAGAAATGATC
TTTCCTGTACAGAAGCTGAGTTCTACGATGTCTGGCTTTTTGAGACAGAG
TCTCATTATGTAGCACTGGCTGGCCTGCAACTCACCCTGTATACCAAGCT
GGCCCTCAAACTCATAGAGGCCTGTCTCGGCCTCCCAAATGGCACTCTGC
CTGGTTCCCTCCTTCTTTGTGTGTGTGTATGGACCCGAGCGCCCCTATCG
CCCTTTTTCTTGCCTGTCCCCGGCCCAGTTCGTTCATTATGTGGCCCTCT
CCTGCCATTGCCCCTCCCCCGT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGTTCAGTGAAAGATCCAACCTGTCTTT
AAAATAAGGTTGGAGCTGAGCGTGGTGGTACATGCCTTTAAGTCCCAGCA
CTCGGGAGGCAGAGGCAGGAAGATCTATGCAAGTTCAAGGCCAGCCCTAT
CTATAAAGTGAGTTCCAGGAAAGCCAGGGCTACACAAAGAAACCCTGTCT
CAAGAAAACATAAAAAAAGAAAGAAAAAGAGAGAAAGGAAGGAAGGAAGG
GAGGGAGGGAGGGAGGCAGTTTTTTTTTTTTCTTCTTTTTCTTTTTTTTT
CTGCCCTCCCTCCCCTATTCACCCACCAACCACTCCCCACCCCTTTTCTC
TCCTTTTTTTTTGTTTTTTTTGGCCCCTCCTTTTAAAAGAGAATGTTTTT
TTCCCCACCCCCCCCCCCCTTTTATTATTCCCCCCCCCTTTTCCCCTCCC
CTTCCCCCCCCCTTTTTTTTTTCCCCCCCCCCCCCCCTTTTCCCCCCCCC
CCCCCCTCTTTTTTCCCCCTCTCTTTCCTCCCCCTCTTTTTCTCCCCTTT
TCCCCCCCCCCCTTCCCCCCTCTTTTTTTTTTTTTTCCTTTTCCCCACCC
CTCTTTCCTTTTGTTTCCCCTCTTTTATCTTCCTTTTTTCCGCCACCTAC
CCCCATTGCTTTTTTTACCCCCCTTCTTTCCTCTCATCTCTCCCCCCCCC
TTTTTTCTTCCTACTCCCTTTCCTCCCCCCCCTCTTTTTTCACTTCCCCC
TCACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_a18.b1 MSMg01no150_a18.b1 CHROMAT_FILE:
MSMg01no150_a18.b1 PHD_FILE: MSMg01no150_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:30 2005
         (147 letters)



>mm_chr1_134993384_134993930
          Length = 547

 Score =  255 bits (132), Expect = 7e-73
 Identities = 144/148 (97%), Gaps = 2/148 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcctgaatgctgggattacgagagtgagacg-aggtactagtggtttcttatggtaat 59
           ||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||
Sbjct: 201 cctcctgaatgctgggattacaagagtgagacgca-gtactagtggtttcttatggtaat 259

                                                                       
Query: 60  gcgcagaagaaaagaacttgactatatttagtatacagaatccacattatatgagtgaga 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 260 gcgcagaagaaaagaacttgactatatttagtatacagaatccacattatatcagtgaga 319

                                       
Query: 120 ccctccagtaaggaggaggactatacat 147
           ||||||||||||||||||||||||||||
Sbjct: 320 ccctccagtaaggaggaggactatacat 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space:    74921
Effective search space used:    74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)