BAC Information

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BAC

Clone NameMSMg01-150A20
Chromosome1 (Build37)
Map Location 166,691,032 - 166,745,753
singlet/doubletdoublet
Overlap geneDpt
Upstream geneKifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
Downstream geneXcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150A20.T7 (MSMg01no150_a20.b1)MSMg01-150A20.TJ (MSMg01no150_a20.g1)
ACCAG352599AG352600
length731726
length of high quality
(start - end)
661 (66 - 726)248 (74 - 321)
definitionCHROMAT_FILE: MSMg01no150_a20.b1 PHD_FILE: MSMg01no150_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:30 2005CHROMAT_FILE: MSMg01no150_a20.g1 PHD_FILE: MSMg01no150_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,745,093 - 166,745,753)(166,691,032 - 166,691,279)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGGGAATCTGGGCTGTGAGAGGGAACATAAAATGTTAGTGTCTATCCTC
TGTGGCATTTGGGGGTTTCTATTTCAAACGGTTCAGATATGTATCACCAC
ACAGCGGAAGCACAGTTCTCAGGATGTCTGTGACTTAAATTAGAAGAGGA
AAGTCCCTGAACTTTTTTCAAATTGCTGTTTTGGAAGGGAGCCTCGAGCT
CTTGCTTCAAGCCCAGGGCTGGTCGGCAGTGGTCACATTTGTTTTGATTA
CTGTTGACAGTCATCAGCCTGGCTACCCTAAGCTGTACATCAACAAGGAC
AGTTTCACCTCCAACTTCTCCTTCTCTCCAAATAAAGCAAACACCTCGCC
CTCCTTCACTTTGCCACTAGATGTCTGCTGTGTTGCTGCCTAACACTTGA
TCTATATTCTTATTTTCTTCCTGTGATAAAGGTAAGTGGCTGTACACTAT
ACACATAACATGGGATCTAGAAGTGGCTGGACCTTTCTGAATCAAGCTCA
CTCTTTTGAAGAGCATTACAGCTTCCATATCTCATGGTCTCCACGAGCAC
AGGGATGATATCACTAAATAAATCAATATAATAGCCATGGTTCAGAACTT
CTCCTAAATCTGTGAAATTTACATATTTTCTATTCTTTCACATTTAGTAA
CTAACTGGATAAAGAAATGAAGGATGTCTTC
TCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATCTAGATTTAATTTGTGCTTTGTTT
AAAGCATAAATTAACTTGGAGCTCCAACTTGGAACACATATCATTTGTGG
ATGGACCGTGACAGCTGTAGAATGTGTTCCTTCTGGAACACAGGAGACTG
GAGATAGGACTTGAGTCTTGACCCCTGTGCATAAATTTCTGGATCAACTG
CTGGCCAAGCCATTGCCCAAAAATAGAATCATTAAATAGCCATCATAGGA
GACAACTAAAGCAATCAGACTGTTATGTTTATGCTGTCTCTTTTTGAGTA
TTTAGATGACTGAATTGGATCTTATACTATGTAGACACTTCTCCTTGAAA
AGCTTAAATGATATCTGAAACCTACCTACTTAAAGGGCTCTTCTTATTTA
TCATACTTGATATGTAACTAAGTTAGTATTGACATTCAGGTTAAGTTTAT
AAAGATGTGTGGGAGGTCACATATGAGTATCCCATCTGCTCACCCCATCA
TTCCTTTTATTAATTTAGACATATATCCCAATTTGTTTTGGGCCACCTAC
TGTTTCCATGCTACTCATGAAGACAATTATAAAACACAACTCTCACCTCA
AAGAAACTAAGATTCGACTTATTCTTGGGCCAAATATGAGTCACCATGGC
CTGGAAATAGGAATTTAGGTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_a20.b1 MSMg01no150_a20.b1 CHROMAT_FILE:
MSMg01no150_a20.b1 PHD_FILE: MSMg01no150_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:30 2005
         (661 letters)



>mm_chr1_166744893_166745953
          Length = 1061

 Score = 1185 bits (613), Expect = 0.0
 Identities = 649/661 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgagagggaacataaaatgttagtgtctatcctctgtggcatttgggggtttctatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gtgagagggaacataaaatgttagtgtctatcctctgtggcatttgggggtttctatttc 802

                                                                       
Query: 61  aaacggttcagatatgtatcaccacacagcggaagcacagttctcaggatgtctgtgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaacggttcagatatgtatcaccacacagcggaagcacagttctcaggatgtctgtgact 742

                                                                       
Query: 121 taaattagaagaggaaagtccctgaacttttttcaaattgctgttttggaagggagcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaattagaagaggaaagtccctgaacttttttcaaattgctgttttggaagggagcctc 682

                                                                       
Query: 181 gagctcttgcttcaagcccagggctggtcggcagtggtcacatttgttttgattactgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagctcttgcttcaagcccagggctggtcggcagtggtcacatttgttttgattactgtt 622

                                                                       
Query: 241 gacagtcatcagcctggctaccctaagctgtacatcaacaaggacagtttcacctccaac 300
           ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 gacagtcataagcctggctaccctgagctgtacatcaacaaggacagtttcacctccaac 562

                                                                       
Query: 301 ttctccttctctccaaataaagcaaacacctcgccctccttcactttgccactagatgtc 360
           ||||||||| |||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct: 561 ttctccttccctccaaataaagcaaacacccccccctccttcactttgccattagatgtc 502

                                                                       
Query: 361 tgctgtgttgctgcctaacacttgatctatattcttattttcttcctgtgataaaggtaa 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 tgctgtgttgctgcctaacacttgatctgtattcttattttcttcctgtgataaaggtaa 442

                                                                       
Query: 421 gtggctgtacactatacacataacatgggatctagaagtggctggacctttctgaatcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggctgtacactatacacataacatgggatctagaagtggctggacctttctgaatcaa 382

                                                                       
Query: 481 gctcactcttttgaagagcattacagcttccatatctcatggtctccacgagcacaggga 540
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 381 gctcactcttttgaagagcatcacagcttccatatctcatggtctccacgagcacaagga 322

                                                                       
Query: 541 tgatatcactaaataaatcaatataatagccatggttcagaacttctcctaaatctgtga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatatcactaaataaatcaatataatagccatggttcagaacttctcctaaatctgtga 262

                                                                       
Query: 601 aatttacatattttctattctttcacatttagtaactaactggataaagaaatgaaggat 660
           ||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 aatatacatattttctatcctttcacatttagtaactaattggataaagaaatgaaggat 202

            
Query: 661 g 661
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no150_a20.g1 MSMg01no150_a20.g1 CHROMAT_FILE:
MSMg01no150_a20.g1 PHD_FILE: MSMg01no150_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:30 2005
         (248 letters)



>mm_chr1_166690832_166691479
          Length = 648

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatctagatttaatttgtgctttgtttaaagcataaattaacttggagctccaacttgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatctagatttaatttgtgctttgtttaaagcataaattaacttggagctccaacttgga 260

                                                                       
Query: 61  acacatatcatttgtggatggaccgtgacagctgtagaatgtgttccttctggaacacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacatatcatttgtggatggaccgtgacagctgtagaatgtgttccttctggaacacag 320

                                                                       
Query: 121 gagactggagataggacttgagtcttgacccctgtgcataaatttctggatcaactgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagactggagataggacttgagtcttgacccctgtgcataaatttctggatcaactgctg 380

                                                                       
Query: 181 gccaagccattgcccaaaaatagaatcattaaatagccatcataggagacaactaaagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccaagccattgcccaaaaatagaatcattaaatagccatcataggagacaactaaagca 440

                   
Query: 241 atcagact 248
           ||||||||
Sbjct: 441 atcagact 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)