BAC Information

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BAC

Clone NameMSMg01-150C13
Chromosome1 (Build37)
Map Location 21,747,753 - 21,748,264
singlet/doubletsinglet
Overlap geneKcnq5
Upstream geneIl17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, D1Mgi28
Downstream geneLOC435612, LOC100040338, Rims1, Rims1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150C13.T7 (MSMg01no150_c13.b1)MSMg01-150C13.TJ (MSMg01no150_c13.g1)
ACCAG352673AG352674
length738738
length of high quality
(start - end)
568 (39 - 606)514 (77 - 590)
definitionCHROMAT_FILE: MSMg01no150_c13.b1 PHD_FILE: MSMg01no150_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:38 2005CHROMAT_FILE: MSMg01no150_c13.g1 PHD_FILE: MSMg01no150_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGCGGAATTCTCACC
CGATGAATACCAAAAGGCCGAGAAACACCTGAAAAAATGTTCAACATCCT
TAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACA
TCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCG
AGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGC
TTGTACAACCACTCTGGAAATCAGTTTGGTGGTTCCTCAGAAAATTAGAC
ATAGTACTACTGGAGGATCCTGCATTACCTCTCCTGGGCATATATCCAGA
AGATGCCTCAACCAGTAAGAAGGACACATGCTCCACTATGTTCATAGCAG
CCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAAAA
GAGGAATGGATACAAAAAATGTGGTACATTTACACAATGGAATACTACTC
AGCTATTAAAAAGAATGAATTCACGAAATTCCTAGGCAAATGGATGGACC
TGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCAAAT
GAAATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGTATATCG
AGATATAAGGCACAAGATGCAAAACACATGACACTGAAGAAGAACGAAGA
CCACAGTGTGGACACTTTGATCCTTCTTAGAATTGGAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATACAGGCAGTTGGGAGCCACC
ACACATGAGGTCTGGAAATCAAGCTCAGATCCTATGGAAGCAATGAGCAA
CTCTTAATCACTGAGCCATCGCTCCAATGCAAGCTTTGCCTTTTGCCCTG
CTGTGTTTCCACACCGTGTTTTGCCTCTGTTTGAATGAAACTTTGAAATC
TGTAGCTAATAATAAATAACAAACTCATTTGAAGTAAGGTTTGATTTTAG
CATTCTTTTTATAAATATTATATATTACATTTCCTGCAAGTCACATAGAA
TATGGAAATGAATAATAATTTTTATATGAATTTTCTTTGGCCTATCATTT
CTTTTCATAATTAAAATACCTGTATCTTATCATCCTTGATAAGCATAAAT
ATGAAGGCTGGGGAAATGGCTTAGGAGTTAAATTGCTTGCCTGGTAAGCA
TGAAGAATGGAGCTTGGATTCTTACAACTCACATAAATGATACATATGTT
TGGCAACCCATATTGAACACCAGCCTCCGAAGGTAGAGATGGACCACCCC
CAGGAGCAAGCAGACTAATGAGATTAACCTTATTGGCAAGCTCTGGATTT
TCTTGAGAGCCTGATTCAAAGAACAAAACGGAATTTACAAAATTGTTCTC
TGCCTTCCATAAAAATACCATAGCCGATGCCGCCTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_c13.g1 MSMg01no150_c13.g1 CHROMAT_FILE:
MSMg01no150_c13.g1 PHD_FILE: MSMg01no150_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:39 2005
         (514 letters)



>mm_chr1_21747738_21748649
          Length = 912

 Score =  936 bits (484), Expect = 0.0
 Identities = 506/514 (98%), Gaps = 2/514 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatacaggcagttgggagccaccacacatgaggtctggaaatcaagctcagatcctatg 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aaatacagacagttgggagccaccacacatgaggtctggaaatcaagctcagatcctatg 468

                                                                       
Query: 61  gaagcaatgagcaactcttaatcactgagccatcgctccaatgcaagctttgccttttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaagcaatgagcaactcttaatcactgagccatcgctccaatgcaagctttgccttttgc 408

                                                                       
Query: 121 cctgctgtgtttccacaccgtgttttgcctctgtttgaatgaaactttgaaatctgtagc 180
           |||||||||||||||||||||||||||||||||||||||||||||  |||||| | ||||
Sbjct: 407 cctgctgtgtttccacaccgtgttttgcctctgtttgaatgaaac--tgaaatttttagc 350

                                                                       
Query: 181 taataataaataacaaactcatttgaagtaaggtttgattttagcattctttttataaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 taataataaataacaaactcatttgaagtaaggtttgattttagcattctttttataaat 290

                                                                       
Query: 241 attatatattacatttcctgcaagtcacatagaatatggaaatgaataataatttttata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 attatatattacatttcctgcaagtcacatagaatatggaaatgaataataatttttata 230

                                                                       
Query: 301 tgaattttctttggcctatcatttcttttcataattaaaatacctgtatcttatcatcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tgaattttctttggcctatcatttcttttcataattaaaatacctgtatcttatcatcct 170

                                                                       
Query: 361 tgataagcataaatatgaaggctggggaaatggcttaggagttaaattgcttgcctggta 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 169 tgataagcataaatatgaaggctggggaaatggcttaggagttaaattgcttgcatagta 110

                                                                       
Query: 421 agcatgaagaatggagcttggattcttacaactcacataaatgatacatatgtttggcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 agcatgaagaatggagcttggattcttacaactcacataaatgatacatatgtttggcaa 50

                                             
Query: 481 cccatattgaacaccagcctccgaaggtagagat 514
           ||||||||||||||||||||| ||||||||||||
Sbjct: 49  cccatattgaacaccagcctctgaaggtagagat 16


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 912
Length adjustment: 10
Effective length of query: 504
Effective length of database: 902
Effective search space:   454608
Effective search space used:   454608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)