BAC Information

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BAC

Clone NameMSMg01-150D01
Chromosome1 (Build37)
Map Location 57,946,257 - 57,946,892
singlet/doubletsinglet
Overlap gene2810022L02Rik
Upstream geneSatb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339
Downstream geneKctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150D01.T7 (MSMg01no150_d01.b1)MSMg01-150D01.TJ (MSMg01no150_d01.g1)
ACCAG352697AG352698
length725724
length of high quality
(start - end)
685 (41 - 725)610 (76 - 685)
definitionCHROMAT_FILE: MSMg01no150_d01.b1 PHD_FILE: MSMg01no150_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:41 2005CHROMAT_FILE: MSMg01no150_d01.g1 PHD_FILE: MSMg01no150_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATT
CCAAGCTATGTGCTGACACACAGTACCGGCCCAACTGACAGCGCTATATT
TACAGCCTGAAGGACGGGGGCTCTGGGTGGTGATTTTTCATGTAGGAAGT
CACACTAACACCCCTCAGACGCCTGCATACATCTTAACTTAAAGCTAACT
TTCCCCGTGCCAGTATAATGATTCTGTTTAAGACTTTTTTAAAAAGTGAG
ATCCTGAATGTCAAGGTGTTATAAAAAGATAAAACACACCTTGCACATGT
CCATAGCCTCCTGCCCGGCGGGGCGTTCAAGGCAAGCTTTGTCGAGCCAG
TTTCATTACCGGAGAGCCTGATAAATGTACCGCCGCGAGTAGCCTGAAGA
GTTCTTTCAGGCTCATGCTGTGAACCCACTCAAGCACAGAATATCATTAT
ATGGCTTTGTTACTATTACTTTTTTCTAATTTTTCAATTATACATTTTTA
AAATTTTATTTTTAGGAATTAGAGAGCTCATGGCTTTAGCATTAACTCTG
CACTGCAATGTAGAGAGGCCGCAGGGAGTCAAGTTTTGCCAACTAGAGAA
GGTAAAGAGACTGTTAGTCCCTTGACCTCTCTATCCAAGGAGCCTAGGTT
TCCCCATGAAAACAGGGTTTAAGGGTCTGTCTCATCCTTCCTTTTCAAAA
ATGAGGTGTAGAGTATACAAGTTCT
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATC
ATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTG
TCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGT
CCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAA
TCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTG
TTGATTTTGTTACCCTCTATCTGCAGGCGTGGGAGACAAGCTCTCTTCTC
TGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAG
GGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGA
AGGCCCAAAACAGGATCTTTCCCAGAATCTGTGTTGCTTTGGCCAGGAAG
GTGGCCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTGG
CTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCCGCCC
CAGAATCTCTGCGACTCTCTCGCCCGTCCCAGAAACAGCTGGCACTCTGT
ATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCCA
AGAAGGCTCCTGCCGGCGCCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_d01.b1 MSMg01no150_d01.b1 CHROMAT_FILE:
MSMg01no150_d01.b1 PHD_FILE: MSMg01no150_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:41 2005
         (685 letters)



>mm_chr1_57946257_57947341
          Length = 1085

 Score = 1147 bits (593), Expect = 0.0
 Identities = 626/637 (98%), Gaps = 2/637 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccaagctatgtgctgacacacagtaccggcccaactgacagcgctatatttacag 65
           ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 636 gaattccaagctatgtgctgacacacagtcccggcccaaatgacagcgctatatttacag 577

                                                                       
Query: 66  cctgaaggacgggggctctgggtggtgatttttcatgtaggaagtcacactaacacccct 125
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cctgaaggacaggggctctgggtggtgatttttcatgtaggaagtcacactaacacccct 517

                                                                       
Query: 126 cagacgcctgcatacatcttaacttaaagctaactttccccgtgccagtataatgattct 185
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 516 cagacgcctgcatacatcttaacttaaagctaactttccccgtgccagcataatgattct 457

                                                                       
Query: 186 gtttaagacttttttaaaaagtgagatcctgaatgtcaaggtgttataaaaagataaaac 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gtttaagacttttttaaaaagtgagatcctgaatgtcaaggtgttataaaaagataaaac 397

                                                                       
Query: 246 acaccttgcacatgtccatagcctcctgcccggcggggcgttcaaggcaagctttgtcga 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 396 acaccttgcacatgtccatagcctcctgcccggcggggcgttcaaggcaagctttgttga 337

                                                                       
Query: 306 gccagtttcattaccggagagcctgataaatgtaccgccgcgagtagcctgaagagttct 365
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 336 gccagtttcattaccggagagcctgataaatgtaccgccacgagtagcctgaagagttct 277

                                                                       
Query: 366 ttcaggctcatgctgtgaacccactcaagcacagaatatcattatatggctttgttacta 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttcaggctcatgctgtgaacccactcaagcacagaatatcattatatggctttgttacta 217

                                                                       
Query: 426 ttacttttttctaatttttcaattatacatttttaaaattttatttttaggaattagaga 485
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 216 ttacttttttctaatttttcaattatacattttaaaaattttatttttaggaattagaga 157

                                                                       
Query: 486 gctcatggctttagcattaactctgcactgcaatgtaga-gaggccgcagggagtcaagt 544
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 156 gctcatggctttagcattaactctgcactgcaatgtagacg-ggccgcagggagtcaagt 98

                                                                       
Query: 545 tttgccaactagagaaggtaaagagactgttagtcccttgacctctctatccaaggagcc 604
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 97  tttgccaactagaggaggtaaagagactgttagtcccttgacctctccatccaaggagcc 38

                                                
Query: 605 taggtttccccatgaaaacagggtttaagggtctgtc 641
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  taggtttccccatgaaaacagggtttaagggtctgtc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)