BAC Information

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BAC

Clone NameMSMg01-150F22
Chromosome1 (Build37)
Map Location 99,309,387 - 99,309,886
singlet/doubletsinglet
Overlap geneEG634346
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331
Downstream geneD1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150F22.T7 (MSMg01no150_f22.b1)MSMg01-150F22.TJ (MSMg01no150_f22.g1)
ACCAG352829AG352830
length732706
length of high quality
(start - end)
272 (50 - 321)501 (79 - 579)
definitionCHROMAT_FILE: MSMg01no150_f22.b1 PHD_FILE: MSMg01no150_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:54 2005CHROMAT_FILE: MSMg01no150_f22.g1 PHD_FILE: MSMg01no150_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTAACTATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAAAGAATCC
GCGGAATTCTGTTTGTTACATTTCCCCTGTGCCAATGAGTTCGAGGCTTT
TTACCACTTTTCTTTATTAGATTCATTTGTACCTGGTTTTATGTTGAGGT
CCTTCATCTACTTGGACATGAGCTTTTTGCAAGGTGACAAGTATTGTAGG
GCAGTGGGCATGGGGGAATAAAGGGAGTGGGAGAAAACCGGAGTCCTGCC
AGAGTTCCAGTGATCTGGTTGGGATAACATGGCAGGACTGCTGCATGCTT
TTCATGAGGCCCCAGGTGGGTGTCTGTTTGTCGCAAGCTATGGACCCAAC
CCACAGGAGGTGCACAAAGGGCATTCTGAAGTCTCTGGGCCTCATGGAGA
CCAGTGATAACTGGTTCCCACCCCCCCTGCTCCCAGACACGGAATAACTC
CGTAGAAAAACATAATACATTTGTGTAAGCCCAATGATCTAATCTGACAT
CCCCTGAAAGAACGGATGAAACGGTAATTTACCAACGAAATGACAACCGA
CGGAAAAACCAAAAATGGCCCACAATGCAAAAATTGTTTTGTTGTTGCAA
TGTTAACCCGCCACCCCCCGGCATTATCAAAATACACGATATTGTCATAT
TTCCTTCTCCCCCTAGCAACAATTTGGTAACAATGAAAATTGCGCGAAAA
CACCTCCAACACCTGTACAACTCCACGGGACG
AAACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTATTTATTATTACATGAAC
TGAACAATATTCTCTCCATTGCTTATATTAATTAGCTAATAATTCTTAAA
CTATGAATATATATTCACATAGGTAATGAAACATTAAGTTGTATATAACT
GTGTTTTATTTGGATTCAAATGGGGACATTGTCATACTTTAAACTCTAAA
TGCAATGTGATTATCTTTGCATTGCATTTATGGATTTTAGAGTAAATATT
TCATGCATAGACATAGCCATTTCATGAATTATTATATGTCTGCTAATTTA
CCCAACTATTTATTGAAACAAATAGGTTGGATTAATTTTCTTCATGAATT
TTTTAGGTATTGTTGTTAAATGACCTTCTGTACTATTTACAATTCTGTAA
TTATATATTAGTCCACAATGCAATGTTTGGTTTTGATTAAAGCTATATAA
TAACAATGCACAGGGTCAATTTTCACTGTTCAAAGAGTCTATGCTTTTCT
GTATAGATAAGCCTAAAATAAACACTAATAAGGTGTGAGAATAGATAACT
TAATGCAGAACACTTGTTGCGTATGAGATCAAACTATAAAATATGGCAAC
ATTTGCATAGTCAAATGAACATACTCAGAAAGAACTTATGAAAGCACTCA
CAAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_f22.g1 MSMg01no150_f22.g1 CHROMAT_FILE:
MSMg01no150_f22.g1 PHD_FILE: MSMg01no150_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:55 2005
         (501 letters)



>mm_chr1_99309187_99310087
          Length = 901

 Score =  944 bits (488), Expect = 0.0
 Identities = 497/500 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtatttattattacatgaactgaacaatattctctccattgcttatattaattagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tggtatttattattacatgaactgaacaatattctctccattgcttatattaattagcta 641

                                                                       
Query: 61  ataattcttaaactatgaatatatattcacataggtaatgaaacattaagttgtatataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ataattcttaaactatgaatatatattcacataggtaatgaaacattaagttgtatataa 581

                                                                       
Query: 121 ctgtgttttatttggattcaaatggggacattgtcatactttaaactctaaatgcaatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ctgtgttttatttggattcaaatggggacattgtcatactttaaactctaaatgcaatgt 521

                                                                       
Query: 181 gattatctttgcattgcatttatggattttagagtaaatatttcatgcatagacatagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gattatctttgcattgcatttatggattttagagtaaatatttcatgcatagacatagcc 461

                                                                       
Query: 241 atttcatgaattattatatgtctgctaatttacccaactatttattgaaacaaataggtt 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 atttcatgaattattatatatctgctaatttacccaactatttattgaaacaaataggtt 401

                                                                       
Query: 301 ggattaattttcttcatgaattttttaggtattgttgttaaatgaccttctgtactattt 360
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 400 ggattaattttcttcatgaattttttaggtattgttgttaaatgagtttctgtactattt 341

                                                                       
Query: 361 acaattctgtaattatatattagtccacaatgcaatgtttggttttgattaaagctatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 acaattctgtaattatatattagtccacaatgcaatgtttggttttgattaaagctatat 281

                                                                       
Query: 421 aataacaatgcacagggtcaattttcactgttcaaagagtctatgcttttctgtatagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aataacaatgcacagggtcaattttcactgttcaaagagtctatgcttttctgtatagat 221

                               
Query: 481 aagcctaaaataaacactaa 500
           ||||||||||||||||||||
Sbjct: 220 aagcctaaaataaacactaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)