BAC Information

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BAC

Clone NameMSMg01-150F23
Chromosome1 (Build37)
Map Location 88,290,723 - 88,291,197
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1
Downstream gene1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150F23.T7 (MSMg01no150_f23.b1)MSMg01-150F23.TJ (MSMg01no150_f23.g1)
ACCAG352831AG352832
length697705
length of high quality
(start - end)
486 (50 - 535)299 (83 - 381)
definitionCHROMAT_FILE: MSMg01no150_f23.b1 PHD_FILE: MSMg01no150_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:55 2005CHROMAT_FILE: MSMg01no150_f23.g1 PHD_FILE: MSMg01no150_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGAAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAACC
GCGGAATTCTGCGTGTCTCTTTGCCCATTTCCCCCAGAACTGCCCCTCCT
GAGTGTTGTTCCTGACTCTTCTTCCGTGGGCTAGCCTGGTACTTTCTCAC
TTAGCCCAGAGGCAGCTCCTGTGTGGAGATAAGCCGGACCCACTTAGTAT
CTTTCCCATGGAGCCGGGATGGGAAGTAAATTTTCTTCAACATGCAGTCT
TGGCTTTAAAGTCTATAAGTTATTGTTCACAGGCATGCTGCTTAGACTTC
CTGTGCCACAGTCTCCTCATTAAAAAAAAAAAAGTTGGGTGACAAAAGGC
TCTAGCTCTAGGCTGTGACTGAGTGTAGACCAGTCATTTCAAAACTGGCA
GATACACATCAGCACATATCTCAAAAATCTTGGTACATTTCCTGAACACA
AGGGACGTGATTGCAGGGAGGGTTGTTTTGTTTCATTTAACCAGGGTCTC
ATTGTGTAACCTGAGCTGGTCTGTAGCTTGCTATGAACGCCAGGCTAACT
TGAACTCACAGAGATCTGCCTCTGGTCTCCTAGTGTTGGGATCAAAAGCT
CTTGCCACCACACCAGGAAGGAAGGACGGTTTAATATTTCTCTTCCAAGG
CGAGAAAAGAACCCAGAGGTTTCCCTCTCTGTTCCCAAAGAAGATTG
TGGGAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTAT
ACAGAGAAACCCTTGTGCTGAAAAAAAAAAAAAAAAAAAAGTTGGGGGTG
GGGAAGGGTTGGGGAATGGTGACACACAATTTAAATCCCAGCAATCAGGA
GGCAAGGCAAGCAGATCGCTGAGTTCAAGGCCAGCTTCATCTACATAGTG
AGTTCCGGGACAGCCAAGGCTACACTAATAGACAAGAGCTTGGAAGTTAA
GAGCACACGCTGTTCTTGCAGAGGACTTCCAGTTCCAGGGTTTCCTATGC
CCTCTGACTTTTGTGGACACCTGCACACACACAGGCCACATAAATTCATA
GCGATACACATGCACATAGAAATAATAAACCCCCGACAGAAAAACACAAA
ATAAAATCTAAGAGACCGGCAGTTAAATCGCAGCTGTGCCCATGGNCACA
ACAACCACAGTGCACTACTGTGAACGACAGTCCTGTGACACGCAGGCTGT
GGGGAGCAAGCATAGGCTCCTCACTTAACCTCAGAGTTGCCCAGAACACC
CCTGAAAACATTGCTTGCCTCAGTCATGTAAGATATACCACTGCCTCATT
GCAACAACTAAAGGGGAACAAGAAAAAAAAATTAGAAACAAACTGGGAAA
GGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_f23.b1 MSMg01no150_f23.b1 CHROMAT_FILE:
MSMg01no150_f23.b1 PHD_FILE: MSMg01no150_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:55 2005
         (486 letters)



>mm_chr1_88290517_88291397
          Length = 881

 Score =  797 bits (412), Expect = 0.0
 Identities = 461/480 (96%), Gaps = 5/480 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   attctgcgtgtctctttgcccatttcccccagaactgcccctcctgagtgttgttcctga 66
           |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attctgtgtgcctctttgcccatttcccccagaactgcccctcctgagtgttgttcctga 266

                                                                       
Query: 67  ctcttcttccgtgggctagcctggtactttctcacttagcccagaggcagctcctgtgtg 126
           ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 267 ctcttcttccgtgggctagcctggtactttctcgcttggcccagaggcagctcctgtgtg 326

                                                                       
Query: 127 gagataagccggacccacttagtatctttcccatggagccgggatgggaagtaaattttc 186
           ||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 327 gagataagccggacccatttagtatctttcccatggagctgggatgggaagttaattttc 386

                                                                       
Query: 187 ttcaacatgcagtcttggctttaaagtctataagttattgttcacaggcatgctgcttag 246
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 387 ttcaacatgcagtcttggctttaaaatatataagttattgttcacaggcatgctgcttag 446

                                                                       
Query: 247 acttcctgtgccacagtctcctcattaaaaaaaaaaaagttgggtgacaaaaggctctag 306
           |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||
Sbjct: 447 acttcctgtgccacagtctcctcat-----aaaaaaaagttgggtgacaaaaggctctag 501

                                                                       
Query: 307 ctctaggctgtgactgagtgtagaccagtcatttcaaaactggcagatacacatcagcac 366
           ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 502 ctctaggctgtgactgagtgtagaccagtcatttcaaaactggaagatacgcatcagcac 561

                                                                       
Query: 367 atatctcaaaaatcttggtacatttcctgaacacaagggacgtgattgcagggagggttg 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atatctcaaaaatcttggtacatttcctgaacacaagggacgtgattgcagggagggttg 621

                                                                       
Query: 427 ttttgtttcatttaaccagggtctcattgtgtaacctgagctggtctgtagcttgctatg 486
           ||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||
Sbjct: 622 ttttgtttcatttaaccagggtctcattgtgtagcctgagctggcctggagcttgctatg 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 881
Length adjustment: 10
Effective length of query: 476
Effective length of database: 871
Effective search space:   414596
Effective search space used:   414596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)