BAC Information

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BAC

Clone NameMSMg01-151B10
Chromosome1 (Build37)
Map Location 115,019,104 - 115,019,449
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626897, LOC666615, LOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151B10.T7 (MSMg01no151_b10.b1)MSMg01-151B10.TJ (MSMg01no151_b10.g1)
ACCAG353349AG353350
length721726
length of high quality
(start - end)
370 (49 - 418)345 (79 - 423)
definitionCHROMAT_FILE: MSMg01no151_b10.b1 PHD_FILE: MSMg01no151_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:49 2005CHROMAT_FILE: MSMg01no151_b10.g1 PHD_FILE: MSMg01no151_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTCTACTGTCTGTATATTGGGGGCCTCATACCAACTGGTGGA
CACTGTCTGTTTGGTGGTCCAGCGTTTGAGATATCTCAGGAGTCCAGATT
AATTGAGATTGCTGGTGCTCCTAGAGGATTGCCCTTTTCATCACCTTCTT
TCAGGCTTCCCTAATTCAACAACAAGGGTCATCTGCTTCTGTGCATTGGT
TGGGTGCAGATATCTATATCTGACTCTTTTAGCTGTTTGTAGGGCCTTCT
CGAGTGTGGTCATGCTAGGCCCCTTTTTGTGAGTGCTCCATAGCCTCAGT
AATAGTGTCAGGCCTTGGGACCTCCACTTGAGCTGGATACGACTTTGGGC
CTCTTGCTCGACCTTCTCCCCCCCACGCTCCTCTCCATTTCCATCCCTGT
AATTATTTCAGACGAGAACAACTATGTGTCACAGTTTTAGTGTGGGATGA
CCCCTGCCTCATGTGATGCCCTGTCTTCCTGCTTTATAAATTTCCTCTCC
TACTGTTGGGCATTTCATCTAAGATCCCTCCCTTTGAGTTCTGAGAGTCT
CTCACCTTCCAGGTCTCTGGTGCATTCAGGAGGGTCCCCTCAACTTTCTA
TGTCCCAAGGTTAACTCTTTCCATTCTTTCTGCTGGCCCTTAGGGTATCA
GTCCTTTTCCCTTGCTCAATA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTCCTCCTTACAGAGCAGCA
AGTATTATCACATGAGTTATATATTTATATGAAACAAAAGATGGGTGATG
TAAAATGTGAAAAGGTCAAAAAGAAAAAAAGACTTTTTAAAAATTAGTCT
AACCTACAGATAGCCAACAGACTGACAAGCAGAATAAGTTTATGTAGCTG
AGTTCCAGGTAGGAAGGCAAAGAAAATAGAAAAAGAAGATGTGTTGGAAA
TTTCAAAGGTTTTGGAAGATAGTAATTAGTGTTTAGGGAACCCCAAGAAA
GATAAATGTAAATAAAAATATCAGGATCTTCATATGTGGACCATTAAACT
TTGAACATAGTGACCACCTTGAACACACAACACTGTCATGCTACATGGGT
AAGGGTAGTTCAAGAGTCATTCAATATTGGTAAGTAACACAAGAGGAAAA
TGCACAAGAATATATCTCTAGGATGATAAAGGATAGACACTGTCACACCA
ACCTCAACAGTGAGGAAACTAAAGCTTTAAAGATGCTCTCTCTATCTCTA
TGATGGAGAATGATCAAGGAAGACACTCAGTATCAAACTTGAGATTCCAC
ATACAGGAACATAAGATACACACACATGTTTTGCAAAATAAGGACATATT
TAGATAGAAATAAGCTAAAGAATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_b10.g1 MSMg01no151_b10.g1 CHROMAT_FILE:
MSMg01no151_b10.g1 PHD_FILE: MSMg01no151_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:49 2005
         (345 letters)



>mm_chr1_115018904_115019649
          Length = 746

 Score =  646 bits (334), Expect = 0.0
 Identities = 343/346 (99%), Gaps = 1/346 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtcctccttacagagcagcaagtattatcacatgagttatatatttatatgaaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cagtcctccttacagagcagcaagtattatcacatgagttatatatttatatgaaacaaa 487

                                                                       
Query: 61  agatgggtgatgtaaaatgtgaaaaggtcaaaaag-aaaaaaagactttttaaaaattag 119
           | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 486 aaatgggtgatgtaaaatgtgaaaaggtcaaaaagaaaaaaaagactttttaaaaattag 427

                                                                       
Query: 120 tctaacctacagatagccaacagactgacaagcagaataagtttatgtagctgagttcca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tctaacctacagatagccaacagactgacaagcagaataagtttatgtagctgagttcca 367

                                                                       
Query: 180 ggtaggaaggcaaagaaaatagaaaaagaagatgtgttggaaatttcaaaggttttggaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggtaggaaggcaaagaaaatagaaaaagaagatgtgttggaaatttcaaaggttttggaa 307

                                                                       
Query: 240 gatagtaattagtgtttagggaaccccaagaaagataaatgtaaataaaaatatcaggat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gatagtaattagtgtttagggaaccccaagaaagataaatgtaaataaaaatatcaggat 247

                                                         
Query: 300 cttcatatgtggaccattaaactttgaacatagtgaccaccttgaa 345
           |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 246 cttcatatgtggaccactaaactttgaacatagtgaccaccttgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 746
Length adjustment: 9
Effective length of query: 336
Effective length of database: 737
Effective search space:   247632
Effective search space used:   247632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)