BAC Information

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BAC

Clone NameMSMg01-151C20
Chromosome1 (Build37)
Map Location 118,179,361 - 118,179,484
singlet/doubletsinglet
Overlap geneCntnap5a
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151C20.T7 (MSMg01no151_c20.b1)MSMg01-151C20.TJ (MSMg01no151_c20.g1)
ACCAG353414AG353415
length741878
length of high quality
(start - end)
124 (120 - 243)---
definitionCHROMAT_FILE: MSMg01no151_c20.b1 PHD_FILE: MSMg01no151_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:55 2005CHROMAT_FILE: MSMg01no151_c20.g1 PHD_FILE: MSMg01no151_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCGCTAAANGAANACCAATTGNTCTTTGCGNGGAANNANNCC
GTATTAAGCTAGGCCCTGAATCAGAGATTTGCCTGACTCTGCCTCCCAAT
GCTGGGATTAACCGCATGCATTACCATGGCTCATCTGACTTATTTTTATT
TCATCAGTAGGAGAAATTTTTTGTTTCTGTGTACCTGATCCAAGGCATAC
CTAGCACCTGTGAAGGCCAGAAAAACCTGATAGTTCTTCTGAATTTTAGT
TTCACATGGTTTCAATCCTCCTTGTTTATGCTTTCAATGAAATCTGGACC
AGCTGAATTTTTTTTTTGAGCAGAACCCNACAGAGCCACCNCCCTATCCT
CTTACCCCCCCCTCTTTCTAAATACCATTGCTTAAAGTCTAGGTGACAGG
ACCCCCCCCCAAGAGTCTCCAGAGGAAAAGACAATGACTACGTGTAAGAC
CACTGCTCGAAACTCCTCGCCACACCAGCATCACTGTTCTTCTCTCCAAA
CATACCTTACAATTCGATTTTAACGTGTTTCTCTCCGTATGCCACAGAGA
CCCAATACCGAACATCTATGTTCACCATGGCTGCACCCGCCACCTGACCC
CTACATGTTCATTGCACCCCCTATACTTCCTCCCGAGACACCCTATTCAC
TCTTTTCTTTTTTTATCCTCCCCCACCCTCAACCTCCTTGTCTCCTTTCA
GCCAGCCCCCCTACCACACTCTCTGTACGCTCCCCGCCCCG
CCTTCCACACCCCCCCACCTTCCCATCTTCCCCCCACCTCCAACCATTTC
CCTCTATGAAGCGGATAGACTGGAGGACGACTGGTTTXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCCCCTCCATACCCTTGAGGA
TCATTGGCCTGGACATGACTACAACGACAAATGTAGCATGCAATGTTCGA
TGCGTAGTTCAGAAGATCTGTATGTACAACTCCAAAAGGCAACCCTACCG
CACCCCCTGCCCCAGAAGCCCATCACTTTTATTCACGCTGAACGCACCTT
GTATAAAAATTTGGGTTCGTCATTTACTAAAGACTAAATCACCATCTGTC
AGAAGGGCTGTGTAATCTCGCCATCTTCTCTTTATTAAATCATGCCCTTT
AATTCGAAAACGTAACCTCTATTTTTCTCCCATTCACCCCCCCCAATCTC
CCGCTTTTTATCTACACTTTCCTCTTTAATTCCCACCCCCCCTCCCCATC
CATCCTCCCCCCCCCCTACCTTTTTCCCCCCCCAATGTTCAACCTCCCTC
AACCATCCTCCCTTAAACCCCGCTCCTTACACCCCCAATTTTTACTTCCC
TCCCCAATTTTTCCCCTTTCCCCCCCACTTTCTTTCCCCTTCTTTCCCCT
CACCCCTCGTTTCCCCCCCTCCCTTTCCCCCCCTATTTAAATCCCCTGAT
TATATCTCCACCCCCCTTCTCTCCCCACATTTATCCCCACCCCTTCATTT
GCTCCCCTTCTCTTCCTTTTTTGCGTTTCACCCACCAACTTTTCCTTCAA
AACACTCTATGAAAATCGGTCTACTCTTTCCCATATAAATCTCCCCCCCG
CGCTGAAAATGGCATGTTAACACATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_c20.b1 MSMg01no151_c20.b1 CHROMAT_FILE:
MSMg01no151_c20.b1 PHD_FILE: MSMg01no151_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:55 2005
         (124 letters)



>mm_chr1_118179161_118179684
          Length = 524

 Score =  217 bits (112), Expect = 2e-61
 Identities = 121/124 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaccatggctcatctgacttatttttatttcatcagtaggagaaattttttgtttctg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 attaccatggctcatctgacttatttttatttcatcagtaggagaatttttttgtttctg 260

                                                                       
Query: 61  tgtacctgatccaaggcatacctagcacctgtgaaggccagaaaaacctgatagttcttc 120
           ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtacctgacccaaggcatacctagtacctgtgaaggccagaaaaacctgatagttcttc 320

               
Query: 121 tgaa 124
           ||||
Sbjct: 321 tgaa 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)