BAC Information

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BAC

Clone NameMSMg01-151E23
Chromosome1 (Build37)
Map Location 111,183,535 - 111,183,736
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435640, EG626474
Downstream geneEG666508, Cdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151E23.T7 (MSMg01no151_e23.b1)MSMg01-151E23.TJ (MSMg01no151_e23.g1)
ACCAG353511AG353512
length723738
length of high quality
(start - end)
209 (77 - 285)447 (71 - 517)
definitionCHROMAT_FILE: MSMg01no151_e23.b1 PHD_FILE: MSMg01no151_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:05 2005CHROMAT_FILE: MSMg01no151_e23.g1 PHD_FILE: MSMg01no151_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAACATCCGCG
GAATTCTTGTTCTTTTAAAGAGTAAGTGTTATCAGAGGAAAACATGTGAT
GTGATGATTGGTTTAAAAAAAAAGAAAAAAAACTTAGAATATGTTTCAGT
ACACAGTCTCTTTAGCATTTTAGATAAATCAAACACTTCCCTTGAAGATG
TGCTATCTTTCAGAAGTACTGTACAGCTTTTGCAACAGCTGGGATCAGAT
AATTGAGTTAGATGCCTTGTGGGTGATAAATCTAAGTTAGATTCATCCAT
GATTTATGCCGAGGATAAGGCAGAAAGATTACCTTAAAGAAAACTAAATA
AAGAATAATAATTTTCTTTGTAGGCACACTACTAACCGAGGCACAACATA
CAACTTTTCCCATCTCTTGCCCCCCTCTTTTCCACACTCCATGTCACTTG
CCAGAAATTCTGCCTTACTGCCCTACACCTTTGCGATTCCTTCTGTGCTG
CCGATCTCCCCTTTCACTCCCCAGCACCTGCGCCCTCCCATGCCCCGTGG
CTTCTGTTCTGCCCCCTACTGAATTATGACGCCCGCCTTACCCCCCCCCA
CTATACGCCCTTGTTTCCCACACCGTCCCATGCCTCCCCCTGACGCACCT
GCCCCCCATTACCCCCTTGTCCCTCCTATCCCCCTTCTCCCGCCTCTTTC
CCCCCCCCTTCCCTGCCCCCGTN
TATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGAATCTAACAATAATGGCTGGTATGGCAA
GACATACTACCTCATGTAACAGTGGCACAAACATCATCAGGGTAAAGGAT
TACTCTATGATTGGATGTAAGGTGTTTCATACAAGAAGGTGTCTTTATAC
GATACTATTACTTGGACAAGAACTTTAAGTGAGAGGATTTAGGAGATAAT
CTACTATTATTACTCTGATAAGTGTATATTGTATTAAATTGTCTCTTTTT
AAATTGATTTTTATATATCTTGATTAATTCAACCCTCATTCCTTATTAAA
GACATTTTAATTGCAGTAAATAAAACTTACCAAAGAAATATACAATGATG
AAATTTTAAAAAATAATATCCTTCATTATCTACTGTAAATGATATAACTA
TATCACTCTCTTTCAAAGTACAAGGATCATTGTGTAAAAGGGGGTGGGCA
GATTGTTAGAGCCATAGGGTGCTCAATGTCTACAGTGAAATCATGTTTCC
AGAAACATAGGGAAGTACACATATGAACTCCCAGAAGTTGTGGCAAAGTA
CACATTTATGAATCAAATTAAATTTATCCTGCATGCAGTATGTGGACACC
AAGTCCCCAACTACCTAGCTAACTAAATTGAACATGAACTGAGCACCTTA
TAGCTACCTCACGAGGCACCGGACCTTTTCCTCAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_e23.b1 MSMg01no151_e23.b1 CHROMAT_FILE:
MSMg01no151_e23.b1 PHD_FILE: MSMg01no151_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:05 2005
         (209 letters)



>mm_chr1_111183328_111183936
          Length = 609

 Score =  358 bits (185), Expect = e-103
 Identities = 200/209 (95%), Gaps = 7/209 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttatcagaggaaaacatgtgatgtgatgattggtttaaaaaaaaagaaaaaaaactta 60
           |||||| ||||||||||||||||||||||||||||||||||||||||       ||||||
Sbjct: 208 tgttattagaggaaaacatgtgatgtgatgattggtttaaaaaaaaa-------aactta 260

                                                                       
Query: 61  gaatatgtttcagtacacagtctctttagcattttagataaatcaaacacttcccttgaa 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gaatatgtttcagtacacagtctctttagtattttagataaatcaaacacttcccttgaa 320

                                                                       
Query: 121 gatgtgctatctttcagaagtactgtacagcttttgcaacagctgggatcagataattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgtgctatctttcagaagtactgtacagcttttgcaacagctgggatcagataattga 380

                                        
Query: 181 gttagatgccttgtgggtgataaatctaa 209
           |||||||||||||||||||||||||||||
Sbjct: 381 gttagatgccttgtgggtgataaatctaa 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)