Query= MSMg01no151_f12.b1 MSMg01no151_f12.b1 CHROMAT_FILE:
MSMg01no151_f12.b1 PHD_FILE: MSMg01no151_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:07 2005
(327 letters)
>mm_chr1_85101535_85102261
Length = 727
Score = 594 bits (307), Expect = e-174
Identities = 322/327 (98%)
Strand = Plus / Plus
Query: 1 agggtagcaaagattaatgcagccatccctacgcctgtcagattgataaccacaacaaaa 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggtagcaaagatcaatgcagccatccctacgcctgtcagattgataaccacaacaaaa 260
Query: 61 atgtcttcaaagacagaaactgcaaacactcagagacagatacctccacctgcttatatg 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 atgtcttcaaagacagaaactgcaaatactcagagacagatacctccacctgcttatatg 320
Query: 121 aaaggcactgagccagtgattaaccaccctatttattcccaaaagacacagcacactgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggcactgagccagtgattaaccaccctatttattcccaaaagacacagcacactgct 380
Query: 181 ggtatcactagtggacttgaccaaatgtcacaggagaaatggtgctttcttaggacatct 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtatcactagtggacttgatcaaatgtcacaggagaaatggtgctttcttaggacatct 440
Query: 241 gcaggagcataagtagccctgactgagtccctgttgggggcatcacacaccttcgtctca 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 gcaggagcagaagtagccctgactgagtccctgttgggggcatcacacaccttcatctca 500
Query: 301 tcttttctatttttattttgaattatg 327
|||||||||||||||||||||||||||
Sbjct: 501 tcttttctatttttattttgaattatg 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no151_f12.g1 MSMg01no151_f12.g1 CHROMAT_FILE:
MSMg01no151_f12.g1 PHD_FILE: MSMg01no151_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:07 2005
(492 letters)
>mm_chr1_87573823_87574714
Length = 892
Score = 851 bits (440), Expect = 0.0
Identities = 479/496 (96%), Gaps = 8/496 (1%)
Strand = Plus / Minus
Query: 1 tttggaaccctctggttgtgagcaaaaaaaccagtacaggagaaaattcactaataagaa 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 540 tttggaaccctctggttgtgagcaaaaaaaacagtacaggagaaaattcactaataagaa 481
Query: 61 aaattggaagcaggctgacattcccttagaaagcctgacctccatccagaccacatgggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aaattggaagcaggctgacattcccttagaaagcctgacctccatccagaccacatgggt 421
Query: 121 ttgccttcctaaattcccagcccagtattatggtgagactccattttgatccccaaggca 180
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 420 ttgccttcctaaatccccagcccagtaggatggtgagactccattttgatccccaaggca 361
Query: 181 gatgcaatttgctggcaaggggccatctgacatcacctagcccttttcttcctaaaacgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gatgcaatttgctggcaaggggccatctgacatcacctagcccttttcttcctaaaacgt 301
Query: 241 tgacttcttacccctcctgttcatctttctgaatccccaccatccttgcctctgtgtcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgacttcttacccctcctgttcatctttctgaatccccaccatccttgcctctgtgtcct 241
Query: 301 ttgtagggaaatcttgaaagtcttatgtggaagagcctga----ccccacagctcagttg 356
|||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct: 240 ttgtagggaaatcttgaaagtcttatgtggaagagcctgagtag----atagttcagttg 185
Query: 357 ataaagttcttggcacacaagcgtgaggacctggcttggaaccctataacccaagtaagg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ataaagttcttggcacacaagcgtgaggacctggcttggaaccctataacccaagtaagg 125
Query: 417 agctgagcatggtggttcatgattgtcataccatagctagagagagatggtggagggtag 476
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
Sbjct: 124 agctgagcatggtggttcatgattgtcataccagagctagagagagatgggggagggtgg 65
Query: 477 ctctctgaggctctgt 492
||||||||||||||||
Sbjct: 64 ctctctgaggctctgt 49
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
