BAC Information

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BAC

Clone NameMSMg01-151H05
Chromosome1 (Build37)
Map Location 91,350,238 - 91,350,802
singlet/doubletsinglet
Overlap genenone
Upstream geneGlrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542, EG665688
Downstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151H05.T7 (MSMg01no151_h05.b1)MSMg01-151H05.TJ (MSMg01no151_h05.g1)
ACCAG353611AG353612
length714723
length of high quality
(start - end)
568 (69 - 636)52 (257 - 308)
definitionCHROMAT_FILE: MSMg01no151_h05.b1 PHD_FILE: MSMg01no151_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:15 2005CHROMAT_FILE: MSMg01no151_h05.g1 PHD_FILE: MSMg01no151_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAGCCGCG
GAATTCCACGGTTCCTTCTAGGCTTTTCCACGAAAATGTTGCACAACTGA
GTTGTAGCCTCCACGCCGCAGCCCTCCGAGCGCCCGACACTAACCCCACT
TTAGCCCAGTCCAGGAGCCCATGAAGCTAGACCGCACTGCAGCTGAGAGC
TCATGCCAACGACTCCAAATGAATTAGATTGTTGTAGATTTCCAAGGATC
CAGGACGAGTCCGAGGCCGTAAAGGTCCTGGGTCTATGCACTGTCTCACC
ATGCAGGGGTGTTTTATAAACAGCCCACATTCCTGATTCAAATGTCCTGG
GCTTTACCTGGTTCAAATGCAAGCTAATGGGCAGCCCAGGGCCCCAGGCA
GCCTAGCTCTTGGTTCTCGCAACTCTTCCGAGTTCCAGTGTTCCTCAAGC
CAGTGTACTGTTCAGCCTTCCTTGTCCCTAACACAGCAGAGGCCCTGGCT
TGTTCTGTGCCTTGCCTCTATCTTCGTCCTTAGCAGAAACACTAATAGAG
ATGCTGGCATGTGGGTTCATTCTACTGTTCGTCCCTACTCCACCTTGAAA
CCCCAACTCTTTGTGAAATAGTTCCAGGACTCCTCTGCTTCGCATCTGGC
TTCTCAACCTCTTTGAGGGTTCCTTTGAACTTCTCTAAGGTTTAAATATG
GATGATACTGGGAG
ACGATTGCAGAGGGTAGGCCAGGCGGCCGCCTGAATGCCGACCTCGANGG
GANNNANNGNATTTGCGGCGAGGAGGGGGANANNNGNAGCANCCACCCGG
CAAACAGGCAGCCAACCAAGCCCCCAGANGNNNAAAGAGAGGGGCCCNGG
CGGGCCAGGCACCAAAAGGAAGGCNGGAAGAAAACAAACGNAAAAGCACA
AACAGGGCGGCCNNAGACNCNCAGGACCCAGGACAGCGAGCCCCCAGATT
TTTGTGTGTCCTCTGCAACAGCAGGGACCACAGCGAGCCTTCATGTATCT
GCCCTTGCTGCCCATTTTTTTTTTAGGCAGACCAACGGCNNCGAGCAAGG
AAACACNCACTAAGCCCCCCCCGCGCAAAAACANAGAGGAAGGGGGGCGG
GGAGAAGCCNNAGGCAGCACACGGCCAGCAGAGCAAGCAAGAGGGCCAGA
GNNCAGAACCCACCACGCAGGCAAAAACNCACCCGCAGCAGCCCAGGAGG
GGGACCCAAGCGCNCAGGGGACGGAGAGAGGCAGAACACCAAAGCNCACC
GGCCAGCCAGCCAAGCCAGCCAGGAAGCCCGAGCNCAACAAGAGACGCAG
ACCCACCCAAGAAAACCAGAGCAAGGAAGGACGACAGCCGACGCAGATGT
CTGCCCGCCACAGCAGGGGCACAAGGGGAAAACACACCGCCAAGACACGC
ACCGACCACAAACACAGACACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_h05.b1 MSMg01no151_h05.b1 CHROMAT_FILE:
MSMg01no151_h05.b1 PHD_FILE: MSMg01no151_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:15 2005
         (568 letters)



>mm_chr1_91350038_91351005
          Length = 968

 Score = 1062 bits (549), Expect = 0.0
 Identities = 561/565 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggcttttccacgaaaatgttgcacaactgagttgtagcctccacgccgcagccctccg 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 765 taggcttttccacgaaaatgttgcacaactgagttgtaacctccacgccgcagccctccg 706

                                                                       
Query: 61  agcgcccgacactaaccccactttagcccagtccaggagcccatgaagctagaccgcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 agcgcccgacactaaccccactttagcccagtccaggagcccatgaagctagaccgcact 646

                                                                       
Query: 121 gcagctgagagctcatgccaacgactccaaatgaattagattgttgtagatttccaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gcagctgagagctcatgccaacgactccaaatgaattagattgttgtagatttccaagga 586

                                                                       
Query: 181 tccaggacgagtccgaggccgtaaaggtcctgggtctatgcactgtctcaccatgcaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tccaggacgagtccgaggccgtaaaggtcctgggtctatgcactgtctcaccatgcaggg 526

                                                                       
Query: 241 gtgttttataaacagcccacattcctgattcaaatgtcctgggctttacctggttcaaat 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 525 gtgttttataaacagcccacattcctgattcaaatgccctgggctttacctggttcaaat 466

                                                                       
Query: 301 gcaagctaatgggcagcccagggccccaggcagcctagctcttggttctcgcaactcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 465 gcaagctaatgggcagcccagggccccaggcagcctagctcttggttcttggaactcttc 406

                                                                       
Query: 361 cgagttccagtgttcctcaagccagtgtactgttcagccttccttgtccctaacacagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cgagttccagtgttcctcaagccagtgtactgttcagccttccttgtccctaacacagca 346

                                                                       
Query: 421 gaggccctggcttgttctgtgccttgcctctatcttcgtccttagcagaaacactaatag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gaggccctggcttgttctgtgccttgcctctatcttcgtccttagcagaaacactaatag 286

                                                                       
Query: 481 agatgctggcatgtgggttcattctactgttcgtccctactccaccttgaaaccccaact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 agatgctggcatgtgggttcattctactgttcgtccctactccaccttgaaaccccaact 226

                                    
Query: 541 ctttgtgaaatagttccaggactcc 565
           |||||||||||||||||||||||||
Sbjct: 225 ctttgtgaaatagttccaggactcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)