CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTGAGCACCATCTAGGACTCAGTCAAAGGGAGACTTACAATGA
TTTCACATTCAGTTGCCTGCTGACATACAGAAGCTCAGAGAATCCAGCAT
CAAAGAAATAGCAAATAGGAAAGTTGTTCTCACTCTAAGGGTGAGAAATC
CCCAGTTTTGGTGTCAATTCTGTCATAAGCCTTGCTGGCTGACTGTAGCC
AATCTCTCAAATGGCCATTGTTGGTGGCATCAGTGACAAAGATGGGAGGC
ATTTAACAAATACCATGGCCAAAGTCAGAAGGCTGTGAGCTTTTCTGAGA
ATTGAGGATACAGGCAAGCACAGCACACACTCCCTGTTTGCTCCCACGGC
CATGGTTAGTGTGTCCCTCCCACACAGGACACTGAAGCCCAGAGGAGTAA
TTTGCTTAAAGTCACATAAAGAACCAGGGTTCATAGGGTTCATACTGGGT
CTGGGTATGAAGAATTTGGGGGGGACGGGGGAGAAGGTGGAGTGNCNTNT
TTTTTTTTCTCGCTTTGTTTTGTNGGCTTTGTTCTTGGCTCCTTTCCCGT
TTTTTTTGGTTTCCTTTTTTTTTCCTCTTTTGTTCTGTCCGCTTCCTTTT
GTCCCCCCCTTTTTTGGTTTTTTGTTTGGTTCTCTTTGTTTATTGTTCTT
TCTTTTCTCTATTTGATTTTTTTCCCTTATTTCG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTAAATGCAACAGCATCTG
CCTATGGGCTCTCCGTGTCTGATCTGCAACAGGGTCAAACGCTTTCTACC
AGAGCGGAAGGACCAATGAGACCAAGATGACTGACAGGTAACTCTGAAAA
GGAAGTTCAATCTACCCTTTAGATTTCAACAGGTTCTCCTGCACTGAATG
ATATGAGCTTGCACACATATGCACACACCGCTCTGTGAGCACGGGCAAAA
GCCACAATCTCCAGCTGCAGAGCTGACTCCTCCCCAAATGCGGCAGGGCT
GTGCTCCCCAGGGTTCCCAGCTACCACACTCTGACCAGACACAGGAAGAG
CAGCCTACATCTCAGCTACCCGCACACGCAGCTTTGCAGTACCTTCCAGT
GAATGCTTCGATCGCCGTTTTGATGGTTTTAACGTTGAGGACCTAGATGC
TCCCACAGAAATGTCAGCCTTAAAGAAGAGGAAAAAAAAGAGTTAGTTGG
CACATTGCACATCAGTTCTAACAGAACTTACTTCCCATGCTCTGCAGGGA
GAGTGTGAACAGGATACATCCTTTGGATTGAGGGGCTGTACCAGAGGGTG
TGTCCACACCCTCATCTGAGGTGGGAGGTAGAGGACACCTCCCTCCTTGC
CCTGCAGTGAGATCCGTCTGTGCCACTTC

Query= MSMg01no151_n09.b1 MSMg01no151_n09.b1 CHROMAT_FILE:
MSMg01no151_n09.b1 PHD_FILE: MSMg01no151_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:45 2005
         (372 letters)



>mm_chr1_93278373_93279144
          Length = 772

 Score =  683 bits (353), Expect = 0.0
 Identities = 365/369 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtgagcaccatctaggactcagtcaaagggagacttacaatgatttcacatt 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtgagcagcatctaggactcagtcaaagggagacttacaatgatttcacatt 263

                                                                       
Query: 64  cagttgcctgctgacatacagaagctcagagaatccagcatcaaagaaatagcaaatagg 123
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagttgcttgctgacatacagaagctcagagaatccagcatcaaagaaatagcaaatagg 323

                                                                       
Query: 124 aaagttgttctcactctaagggtgagaaatccccagttttggtgtcaattctgtcataag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaagttgttctcactctaagggtgagaaatccccagttttggtgtcaattctgtcataag 383

                                                                       
Query: 184 ccttgctggctgactgtagccaatctctcaaatggccattgttggtggcatcagtgacaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 ccttgctggctgactgtagccaatctctcaaatggccattgttggtggcattagtgacaa 443

                                                                       
Query: 244 agatgggaggcatttaacaaataccatggccaaagtcagaaggctgtgagcttttctgag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agatgggaggcatttaacaaataccatggccaaagtcagaaggctgtgagcttttctgag 503

                                                                       
Query: 304 aattgaggatacaggcaagcacagcacacactccctgtttgctcccacggccatggttag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 504 aattgaggatacaggcaagcacagcacacactccctgtttgctcccacggccatggttac 563

                    
Query: 364 tgtgtccct 372
           |||||||||
Sbjct: 564 tgtgtccct 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no151_n09.g1 MSMg01no151_n09.g1 CHROMAT_FILE:
MSMg01no151_n09.g1 PHD_FILE: MSMg01no151_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:45 2005
         (598 letters)



>mm_chr1_93403714_93404711
          Length = 998

 Score = 1125 bits (582), Expect = 0.0
 Identities = 594/598 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctttaaatgcaacagcatctgcctatgggctctccgtgtctgatctgcaacagggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cttctttaaatgcaacagcatctgcctatgggctctccgtgtctgatctgcaacagggtc 739

                                                                       
Query: 61  aaacgctttctaccagagcggaaggaccaatgagaccaagatgactgacaggtaactctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aaacgctttctaccagagcggaaggaccaatgagaccaagatgactgacaggtaactctg 679

                                                                       
Query: 121 aaaaggaagttcaatctaccctttagatttcaacaggttctcctgcactgaatgatatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaaaggaagttcaatctaccctttagatttcaacaggttctcctgcactgaatgatatga 619

                                                                       
Query: 181 gcttgcacacatatgcacacaccgctctgtgagcacgggcaaaagccacaatctccagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gcttgcacacatatgcacacaccgctctgtgagcacgggcaaaagccacaatctccagct 559

                                                                       
Query: 241 gcagagctgactcctccccaaatgcggcagggctgtgctccccagggttcccagctacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gcagagctgactcctccccaaatgcggcagggctgtgctccccagggttcccagctacca 499

                                                                       
Query: 301 cactctgaccagacacaggaagagcagcctacatctcagctacccgcacacgcagctttg 360
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 498 cactctgaccagacacaggaagagcagcctacatctcagctacgtgcacacgcagctttg 439

                                                                       
Query: 361 cagtaccttccagtgaatgcttcgatcgccgttttgatggttttaacgttgaggacctag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 438 cagtaccttccagtgaatgcttcgatcgccgttttgatggttttaacgtcgaggacctag 379

                                                                       
Query: 421 atgctcccacagaaatgtcagccttaaagaagaggaaaaaaaagagttagttggcacatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atgctcccacagaaatgtcagccttaaagaagaggaaaaaaaagagttagttggcacatt 319

                                                                       
Query: 481 gcacatcagttctaacagaacttacttcccatgctctgcagggagagtgtgaacaggata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gcacatcagttctaacagaacttacttcccatgctctgcagggagagtgtgaacaggata 259

                                                                     
Query: 541 catcctttggattgaggggctgtaccagagggtgtgtccacaccctcatctgaggtgg 598
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 catcctttgtattgaggggctgtaccagagggtgtgtccacaccctcatctgaggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)