Query= MSMg01no151_p23.b1 MSMg01no151_p23.b1 CHROMAT_FILE:
MSMg01no151_p23.b1 PHD_FILE: MSMg01no151_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:58 2005
(684 letters)
>mm_chr1_19852577_19853660
Length = 1084
Score = 1234 bits (638), Expect = 0.0
Identities = 673/692 (97%), Gaps = 12/692 (1%)
Strand = Plus / Minus
Query: 5 gaattctctcctgtgtctgcctttttg------------gtgtgtgtgtgtgtgtgtgtg 52
|||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 944 gaattctctcctgtgtgtgcctttttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 885
Query: 53 ctgactgtcttgtgttgcttccacagacatatttacaatattccaagtctcacttcggat 112
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 ctgactgtcttgtgttgcttccacagacatatttacaatattccaagtctcacttcggac 825
Query: 113 tctcaaatgctagcatcttggagaccctccttatctaagagggtggctcttgtttaaaaa 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 tctcaaatgctagcatcttggagaccctccttatctaagagggtggctcttgtttaaaaa 765
Query: 173 ctgcacaatgtaaattgtatctggtgtttaatgaatagcactgaaattgctgtatggtgc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ctgcacaatgtaaattgtatctggtgtttaatgaatagcactgaaattgctgtatggtgc 705
Query: 233 cacatattcgctactgaacgtgtcatgaggcaacattttataggcattgtaaaatctttt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cacatattcgctactgaacgtgtcatgaggcaacattttataggcattgtaaaatctttt 645
Query: 293 ttaccacacacagatgcattacccaaaattactcaaatctgcagggcatctgaaactcgc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ttaccacacacagatgcattacccaaaattactcaaatctgcagggcatctgaaactcgc 585
Query: 353 tctgcaacagtaataggcttccccgcttaaaaagtggttatgactaatgcacagacacaa 412
|||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 584 tctgcaacagtaataggctttgctgcttaaaaagtgattatgactaatgcacagacacaa 525
Query: 413 ttatcactacactcaaccaccaggaattcattctcactgaaatttgaacaattgctaaga 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ttatcactacactcaaccaccaggaattcattctcactgaaatttgaacaattgctaaga 465
Query: 473 aaaactaagtaattttcaaaacttacaggatcataaagcagaactagagaaatattttca 532
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 464 aaaactaagtaattttcaaaacttacaggatcataaagcagaactagtgaaatattttca 405
Query: 533 tctgtcagtctatacaaggaagattttattggcagtatttttacaacccctaacatttta 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tctgtcagtctatacaaggaagattttattggcagtatttttacaacccctaacatttta 345
Query: 593 ccattttgtaatatatactgtagattcattagaaacattccaaaagagttaatgattata 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ccattttgtaatatatactgtagattcattagaaacattccaaaagagttaatgattata 285
Query: 653 actaactcatggggctgttcctacagcaagaa 684
||||||||||||||||||||||||||||||||
Sbjct: 284 actaactcatggggctgttcctacagcaagaa 253
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no151_p23.g1 MSMg01no151_p23.g1 CHROMAT_FILE:
MSMg01no151_p23.g1 PHD_FILE: MSMg01no151_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:58 2005
(670 letters)
>mm_chr1_19673346_19674416
Length = 1071
Score = 1237 bits (640), Expect = 0.0
Identities = 664/672 (98%), Gaps = 2/672 (0%)
Strand = Plus / Plus
Query: 1 ctttgttcagttcactccatcctcaaatgtgccatgaggggattccagttaacctttagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ctttgttcagttcactccatcctcaaatgtgccatgaggggattccagttaacctttagg 259
Query: 61 -gtttttttttccccttatttagctcaagaggaatgtgcagtttagagaggccagacaac 119
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 260 tttttttttttccccttatttagcccaagaggaatgtgcagtttagagaggccagacaac 319
Query: 120 ttgctgtgcaaacaggtagttagcagaaggtgagactgaaatataggtttacaagtttca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgctgtgcaaacaggtagttagcagaaggtgagactgaaatataggtttacaagtttca 379
Query: 180 aaccttcctttgcttctagctgagtaacaacgctgaactagactggtctgcctgctctta 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 380 aaccttcctttgcttctagctgagtaacaacactgaactagactggtctgcctgctctta 439
Query: 240 tccataagattagggacttaaccaccacttaaggagccatgccaagatatagatatagaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tccataagattagggacttaaccaccacttaaggagccatgccaagatatagatatagaa 499
Query: 300 acctaaaggcttcatcttgctcttaaacttctaatgaaactgttgccccattttcttcct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acctaaaggcttcatcttgctcttaaacttctaatgaaactgttgccccattttcttcct 559
Query: 360 ctgcccagcagaagtcactcattctgagggactttactgaaagagccaataagcaagagg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgcccagcagaagtcactcattctgagggactttactgaaagagccaataagcaagagg 619
Query: 420 caaagtacagagaggaaa-tatgaggaagcattcctcagtcataccctttgctgcaatcc 478
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 620 caaagtacagagaggaaaatatgaggaagcattcctcagtcataccctttgctgcaatgc 679
Query: 479 catgctgcccggagttactacttcatccagcttctcctattcctattccattgctcccta 538
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 catgctgccaggggttactacttcatccagcttctcctattcctattccattgctcccta 739
Query: 539 aaaataaatcccccattagctccacccatgatctctgatgaattcagagataaattgaat 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaaataaatcccccattagctccacccatgatctctgatgaattcagagataaattgaat 799
Query: 599 ttccaatttaaactggagcttggcaaggagtgaaagaactttccaagggctgtttctcag 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttccaatttaaactggagcttggcaaggagtgaaagaactttccaagggctgtttctcag 859
Query: 659 cactcctcatgt 670
||||||||||||
Sbjct: 860 cactcctcatgt 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1071
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1061
Effective search space: 700260
Effective search space used: 700260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
