BAC Information

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BAC

Clone NameMSMg01-152L16
Chromosome1 (Build37)
Map Location 139,214,737 - 139,215,106
singlet/doubletsinglet
Overlap geneLOC100042567
Upstream geneCamsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3
Downstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152L16.T7 (MSMg01no152_l16.b1)MSMg01-152L16.TJ (MSMg01no152_l16.g1)
ACCAG354527AG354528
length746745
length of high quality
(start - end)
376 (44 - 419)425 (69 - 493)
definitionCHROMAT_FILE: MSMg01no152_l16.b1 PHD_FILE: MSMg01no152_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:54 2005CHROMAT_FILE: MSMg01no152_l16.g1 PHD_FILE: MSMg01no152_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGGATGCACATGCCGTCTGTTTCCTAGAGTGAGAGTTGAAAGCAAAT
CAAAATTCAAGTAGATGGCACTGGATGAGTGGCCTCTAGTGGCTATGCAC
TCCACCACCAAGATAGGCATGGTGTACATAGCACATACAGCTCCCGGGTG
AACAGGTTTGTGGGTGGGAGGGACACTTCAGTGTAATAGGCCAAGTGATC
TGGGTCACATTTTTATCTAGTCTGTATCAATATCTTTACTATAAATGTAA
AGATACATATATTCTTTTCTCCAGAGATTGCATACACACACACACACACA
CACACACACACACACACACTGCCCTCCCAAAGACAAAGTGTGGTACTCAA
ATGAAGACTGTACAGTTGGCACATCTAGGATGGCATTGGGACAGGTTTTG
TGTGTTTACTCTCCTCAGAACTGTGCATCCAGTTTTCTTAAAATCCACTA
GATATAATAAGTGCGTCGATTTTCTACATTAATTTTACATGCCACATCTT
AAGCATGCGGTGGGACGGCTGAAAACCGATAATTTTGTATAGTATATAGC
ATGTCTCAACATCAGTGCAAAAAGTAGTTTTTCTTTTCTGTTCTATTTTA
ATTTATTTTTATTACGTACAAAGGAAATGTTCATTGCCCTGATTTTTTTA
AAGTTAGGTTCGACATTTCTAGTGCAATCTGATCTGCAGTTGACTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCCAATTCTCCACCACACCATAAGGACACTTGCTCAA
CTGTGTTCATAGCAATTTATACATAATATTCTGAAAGCAGAAACAACCTA
GATGTTCCTCAACCAAGTAATGAATAAAGAAAATATGGTACATTTACACA
ATTGAATAATACTCAGCTATTAAAAACAATGACATGATGAAAGTTGCAGG
TAAATGAATGGAAGTAGAAAAGATCATCCTGCTATAGTGAGATAACCCAG
ACCCAGAAAGACAAATGTGGTATGTACTTACTTATAAGTGGATGTTAGCC
ATAAAGTAAGGGATAATAATGATACAATTCACAGACTCAAAGATGCCAAG
TAAGAATGAGGGCTCAAGGAGGGAAGTGTAAATGTCACTGTAAAAGGAGA
AATAGATAGGAGGGAACTAGGTAGGGGTGGGGACTGGAGGGGGAACAGGA
GGGACCAGGTGAGGGGAGGACAAAGGGTGATAGAACTGCTAAAAGCACCT
GAAATTCGGTGATGTGGCATCTCTGGGATGACCTAGAAAGCTAGGGCAAT
GGAACCTCCCATAAATCTTTGAGGATGGAACTAGTTAACACTCCTTACAC
CTGATAGATATTGCATTCTCGAATAGCCTTCTCCTATATCTAGGCAATTC
TTTTCCATTGATGGATTGTATTATCACCCACTTCCCTTACCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_l16.b1 MSMg01no152_l16.b1 CHROMAT_FILE:
MSMg01no152_l16.b1 PHD_FILE: MSMg01no152_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:54 2005
         (376 letters)



>mm_chr1_139214533_139215308
          Length = 776

 Score =  669 bits (346), Expect = 0.0
 Identities = 365/372 (98%), Gaps = 2/372 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggatgcacatgccgtctgtttcctagagtgagagttgaaagcaaatcaaaatt 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggatgcacatgcagtctgtttcctagagtgagagttgaaagcaaatcaaaatt 264

                                                                       
Query: 65  caagtagatggcactggatgagtggcctctagtggctatgcactccaccaccaagatagg 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 caagtagatggcactggatgagtggcctctagtggctatgcactccaccatcaagatagg 324

                                                                       
Query: 125 catggtgtacatagcacatacagctcccgggtgaacaggtttgtgggtgggagggacact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catggtgtacatagcacatacagctcccgggtgaacaggtttgtgggtgggagggacact 384

                                                                       
Query: 185 tcagtgtaataggccaagtgatctgggtcacatttttatctagtctgtatcaatatcttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcagtgtaataggccaagtgatctgggtcacatttttatctagtctgtatcaatatcttt 444

                                                                       
Query: 245 actataaatgtaaagatacatatattcttttctccagagattgcatacacacacacacac 304
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 actataaatgtaaagatacatatattcttttctccagagattgtatacacacacacacac 504

                                                                       
Query: 305 acacacacacacacacacacactgccctcccaaagacaaagtgtggtactcaaatgaaga 364
           || |||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acgcacacacacacatacac--tgccctcccaaagacaaagtgtggtactcaaatgaaga 562

                       
Query: 365 ctgtacagttgg 376
           ||||||||||||
Sbjct: 563 ctgtacagttgg 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)