BAC Information

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BAC

Clone NameMSMg01-152M21
Chromosome1 (Build37)
Map Location 98,667,747 - 98,668,193
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1833
Downstream geneSlco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152M21.T7 (MSMg01no152_m21.b1)MSMg01-152M21.TJ (MSMg01no152_m21.g1)
ACCAG354579AG354580
length817878
length of high quality
(start - end)
483 (181 - 663)448 (217 - 664)
definitionCHROMAT_FILE: MSMg01no152_m21.b1 PHD_FILE: MSMg01no152_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:00 2005CHROMAT_FILE: MSMg01no152_m21.g1 PHD_FILE: MSMg01no152_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCAACAACGACAAAAGCCGAAACCCGCCACCCCGGGACAAAAGGGGACG
GAAAAGGAGCGGGGGGGAAANCTGAACNNNNNCNGGGNCCGTTTATANNN
AAAAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGACGAATC
CGCGGATTCTTTGTTTCTGTCTGCACTCCCGTTTTTAATTAGATTGTTTT
GGTTTTCTTGATACTTACTTTCTTTAGTTCTTTATATATGTTTGATACTA
GTTCTCCATCAGACATGGAATTGGTAAAATTTCTTTCTCATTCTGTAGGT
TGCTGATTTGTCCAAATTAAGGTATACTTTGCCTTACAGAAGCTTTTCAG
TTCCATGAGTTCCCATTTAATGATTGTTGATTTTAGTACCTTGCTATAAG
TGTTCTGTTCAGAAAGTGTTCTTCTATGACAATGTGTTAAAGGTTTTTCT
TTCACTTTCTCTTTCTCTTCTGTTAGGTTCAGTGTATTTTGTTGTATGTT
AAGGATTTTGGTCCATCTGGACTTGAATTTTGTGCAGTGTGATAAATATG
AATCTATTTGCATTCTTCTACATGCAGGCATCCAGGTAGATGAGCACCAT
TTGTTAAAGATGCACTTTTTCAAGTGTTTATTTCTGGTTTCTTTATTAAA
AAAAAAATCAGGCGTTCATAGGTGTGGCGGTTTATGTCTGGGTCCTTAGT
TAGATTTCTTTAATCCGTGTATCTGTTTTCTGCCCACGTCATGTGATTTT
TATTGCCACAGTCCCAAGGTACAACATGCAATTGGAAATGCGAGAGATCT
CCATCAGTCCTTTTCTC
ACACAGGATTGACAAACGAAGCGCACGGAAAAACGGGCGGGCGAACGGGA
ACGGACGAACGGGGACCGGGGGGGGGGACCCGGGGGGCCCGGAAGGGCGT
GGGGGGTCCGGCCGNGGCNNNNNNNCTACAAANANNTTCGTATGATAXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCTCCATGTATCTCAAATACAACTCTTCTAAAAAGCTTCTG
TTTAGATGATTCTTATACTGCCAAGTATCATTGCAGGAATTTCTGGTTTA
AGAATATAGAGAAAAATGTATAAAGAGGCACCATTCGGGAAAGGTGAAAT
ACTAGCTCCCATTTTAACTGATGTCTTCCCTGGCTAGTACAGTTTGTCAA
AGGAACAAATTCTAGAAGATGAGAACACCAGATCTTGCAACATTTGCATT
ACAAATTCACAAAATGCCGGTTTGAGTTAAACATTAAGATGCAGTAGTGC
ATGTTTCTGTCACTGTGTGTCATAGATGGACCCCCTCCTTGCCTTCTGTG
CAGGCTAAGAATCAAAGTTACTCTGTTCTGTCTGATTGTGCTGGAGGAGA
TGAACAGCAGTTTGTAGACCAGTGATCATCTGAGGTATGAAGTATCAGCT
CATTCACACAGAAGAGGTTTTGCTGGTGCTGAACATTGTCGTAAACAAAT
AGGATTGAACAAAGTTTATACCATGGGTGGACTTTCGCTCTAAGCCCTTG
GGGTCAGAATTAAACATTCCTTTTCAATCTCTACTGGAGTACCCCAACAT
CTCACCTATCCCTCGAAATACCATCCTCCTGCTGACATCCCTAGGAACCT
CCTCAGGCCCCTATTCACCAAGGTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_m21.g1 MSMg01no152_m21.g1 CHROMAT_FILE:
MSMg01no152_m21.g1 PHD_FILE: MSMg01no152_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:00 2005
         (448 letters)



>mm_chr1_98667547_98668393
          Length = 847

 Score =  843 bits (436), Expect = 0.0
 Identities = 445/448 (99%), Gaps = 1/448 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatctcaaatacaactcttctaaaaagcttctgtttagatgattcttatactgccaagt 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 gtatctcaaatacaactcttctaaaaagct-ctgtttagatgattcttatactgccaagt 259

                                                                       
Query: 61  atcattgcaggaatttctggtttaagaatatagagaaaaatgtataaagaggcaccattc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 260 atcattgcaggaatttctggtttaggaatatagagaaaaatgtataaagaggcaccattc 319

                                                                       
Query: 121 gggaaaggtgaaatactagctcccattttaactgatgtcttccctggctagtacagtttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gggaaaggtgaaatactagctcccattttaactgatgtcttccctggctagtacagtttg 379

                                                                       
Query: 181 tcaaaggaacaaattctagaagatgagaacaccagatcttgcaacatttgcattacaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcaaaggaacaaattctagaagatgagaacaccagatcttgcaacatttgcattacaaat 439

                                                                       
Query: 241 tcacaaaatgccggtttgagttaaacattaagatgcagtagtgcatgtttctgtcactgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcacaaaatgccggtttgagttaaacattaagatgcagtagtgcatgtttctgtcactgt 499

                                                                       
Query: 301 gtgtcatagatggaccccctccttgccttctgtgcaggctaagaatcaaagttactctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtgtcatagatggaccccctccttgccttctgtgcaggctaagaatcaaagttactctgt 559

                                                                       
Query: 361 tctgtctgattgtgctggaggagatgaacagcagtttgtagaccagtgatcatctgaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctgtctgattgtgctggaggagatgaacagcagtttgtagaccagtgatcatctgaggt 619

                                       
Query: 421 atgaagtatcagctcattcacacagaag 448
           |||||||||||| |||||||||||||||
Sbjct: 620 atgaagtatcagttcattcacacagaag 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 847
Length adjustment: 10
Effective length of query: 438
Effective length of database: 837
Effective search space:   366606
Effective search space used:   366606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)