BAC Information

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BAC

Clone NameMSMg01-152N20
Chromosome1 (Build37)
Map Location 98,667,744 - 98,668,379
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1833
Downstream geneSlco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152N20.T7 (MSMg01no152_n20.b1)MSMg01-152N20.TJ (MSMg01no152_n20.g1)
ACCAG354620AG354621
length732732
length of high quality
(start - end)
564 (47 - 610)637 (76 - 712)
definitionCHROMAT_FILE: MSMg01no152_n20.b1 PHD_FILE: MSMg01no152_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:05 2005CHROMAT_FILE: MSMg01no152_n20.g1 PHD_FILE: MSMg01no152_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTCTGCCTGTACTCCAGTTTTTAATTAGATTGTTTTGGT
TTTCTTGATACTTACTTTCTTTAGCTCTTTATATATGTTTGATACTAGTT
CTCCATCAGACATGGAATTGGTAAAATTTCTTTCTCATTCTGTAGGTTGC
TGATTTGTCCAAATTAAGGTATACTTTGCCTTACAGAAGCTTTTCAGTTC
CATGAGTTCCCATTTAATGATTGTTGATTTTAGTACCTTGCTATAAGTGT
TCTGTTCAGAAAGTGTTCTTCTATGACAATGTGTTAAAGGTTTTTCTTTC
ACTTTCTCTTTCTCTTCTGTTAGGTTCAGTGTATTTTGTTGTATGTTAAG
GATTTTGGTCCATCTGGACTTGAATTTTGTGCAGTGTGATAAATATGAAT
CTATTTGCATTCTTCTACATGCAGGCATCCAGGTAGATGAGCACCATTTG
TTAAAGATGTACTTTTTCAAGTGTTTATTTCTGGTTTCTTTATTAAAAAA
AAAATCAGGTGTTCATAGGTGTGGCGGTTTATGTCTGGGTCTTTAGTTAG
ATTTCTTTAATCAGCGTATCTGTTTTCTGTCAATGTCATGTGATTTTTAT
TGCCACAGCTCCCAGGTACAACATGACATTGGAAATGGGGAGATCTCCAC
CAGTTCTTTTCTTGTTCATGGTTGCTTTAGCT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGTATCTCAAATACAACTCTTCT
AAAAAGCTTCTGTTTAGATGATTCTTATACTGCCAAGTATCATTGCAGGA
ATTTCTGGTTTAAGAATATAGAGAAAAATGTATAAAGAGGCACCATTCGG
GAAAGGTGAAATACTAGCTCCCATTTTAACTGATGTCTTCCCTGGCTAGT
ACAGTTTGTCAAAGGAACAAATTCTAGAAGATGAGAACACCAGATCTTGC
AACATTTGCATTACAAATTCACAAAATGCCGGTTTGAGTTAAACATTAAG
ATGCAGTAGTGCATGTTTCTGTCACTGTGTGTCATAGATGGACCCCCTCC
TTGCCTTCTGTGCAGGCTAAGAATCAAAGTTACTCTGTTCTGTCTGATTG
TGCTGGAGGAGATGAACAGCAGTTTGTAGACCAGTGATCATCTGAGGTAT
GAAGTATCAGTTCATTCACACAGAAGAGGTTTTGCTGGTGCTGAACATTG
CCGTAAACAAATAGGATTGAACAAAGTTTATACCATGGTGGACTTTGCTC
TAGCCCTTGGGTCAGAATTAAACATTCTTTTCAATTCTACTGAGTACCCA
ACACTCACTATCCTGAAATACATCTCTGTGAATCCTAGATTCCTAGGCCT
ATCACAAGGATAATATTGTCTTTGGTGGGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_n20.g1 MSMg01no152_n20.g1 CHROMAT_FILE:
MSMg01no152_n20.g1 PHD_FILE: MSMg01no152_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:05 2005
         (637 letters)



>mm_chr1_98667544_98668579
          Length = 1036

 Score = 1193 bits (617), Expect = 0.0
 Identities = 632/637 (99%), Gaps = 1/637 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtatctcaaatacaactcttctaaaaagcttctgtttagatgattcttatactgcca 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 catgtatctcaaatacaactcttctaaaaagct-ctgtttagatgattcttatactgcca 259

                                                                       
Query: 61  agtatcattgcaggaatttctggtttaagaatatagagaaaaatgtataaagaggcacca 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 260 agtatcattgcaggaatttctggtttaggaatatagagaaaaatgtataaagaggcacca 319

                                                                       
Query: 121 ttcgggaaaggtgaaatactagctcccattttaactgatgtcttccctggctagtacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttcgggaaaggtgaaatactagctcccattttaactgatgtcttccctggctagtacagt 379

                                                                       
Query: 181 ttgtcaaaggaacaaattctagaagatgagaacaccagatcttgcaacatttgcattaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttgtcaaaggaacaaattctagaagatgagaacaccagatcttgcaacatttgcattaca 439

                                                                       
Query: 241 aattcacaaaatgccggtttgagttaaacattaagatgcagtagtgcatgtttctgtcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aattcacaaaatgccggtttgagttaaacattaagatgcagtagtgcatgtttctgtcac 499

                                                                       
Query: 301 tgtgtgtcatagatggaccccctccttgccttctgtgcaggctaagaatcaaagttactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtgtgtcatagatggaccccctccttgccttctgtgcaggctaagaatcaaagttactc 559

                                                                       
Query: 361 tgttctgtctgattgtgctggaggagatgaacagcagtttgtagaccagtgatcatctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgttctgtctgattgtgctggaggagatgaacagcagtttgtagaccagtgatcatctga 619

                                                                       
Query: 421 ggtatgaagtatcagttcattcacacagaagaggttttgctggtgctgaacattgccgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 620 ggtatgaagtatcagttcattcacacagaagaggttttgctggtgctgaacattgtcgta 679

                                                                       
Query: 481 aacaaataggattgaacaaagtttataccatggtggactttgctctagcccttgggtcag 540
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aacaaataggatttaacaaagtttataccatggtggactttgctctagcccttgggtcag 739

                                                                       
Query: 541 aattaaacattcttttcaattctactgagtacccaacactcactatcctgaaatacatct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aattaaacattcttttcaattctactgagtacccaacactcactatcctgaaatacatct 799

                                                
Query: 601 ctgtgaatcctagattcctaggcctatcacaaggata 637
           |||||||||||||||||||||||||||||||| ||||
Sbjct: 800 ctgtgaatcctagattcctaggcctatcacaatgata 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space:   643302
Effective search space used:   643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)