Query= MSMg01no153_a23.b1 MSMg01no153_a23.b1 CHROMAT_FILE:
MSMg01no153_a23.b1 PHD_FILE: MSMg01no153_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:21 2005
(696 letters)
>mm_chr1_154366883_154367978
Length = 1096
Score = 1180 bits (610), Expect = 0.0
Identities = 660/692 (95%), Gaps = 25/692 (3%)
Strand = Plus / Plus
Query: 5 gaattcctcacaccgggacccctcagctagcccaagatgaacaggctctccaagacaggt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcacaccgggacccctcagctagcccaagatgaacaggctctccaagacaggt 264
Query: 65 acatggtgtccaagtgttcacaaggactaacaccacagagagtcctctcacccctgctca 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatggtgtccaagtgttcacaaggactaacaccacagagagtcctctcacccctgctct 324
Query: 125 cctatttggggccacgataatggccctcccatctatacagcagttagcatttctgcaaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctatttggggccacgataatggccctcccatctatacagcagttagcatttctgcaaag 384
Query: 185 ccctttccagtatattatttatggtgacttcataattaccgagaccagagagagcttttg 244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccctttccagtgtattatttatggtgacttcataattaccgagaccagagagagcttttg 444
Query: 245 tctccagggagttggttaaggatgacggcagcaaggcatttgttgagatcactcagctgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctccagggagttggttaaggatgacggcagcaaggcatttgttgagatcactcagctgg 504
Query: 305 gggcagagctgagcccaggtttccctctttgagccactggatctgcagatccactggcct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggcagagctgagcccaggtttccctctttgagccactggatctgcagatccactggcct 564
Query: 365 ccttttgcgctactctgaagccacatgctataattcaacagacctctttggggatttatc 424
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 ccttttgcactactctgaagccacatgctacaattcaacagacctctttggggatttatc 624
Query: 425 attttaactgcaactgtatttaagtattacaaatgacagtcaggggatggctacacctga 484
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attttagctgcaactgtatttaagtattacaaatgacagtcaggggatggctacacctga 684
Query: 485 aaagtgcttgctttataggcacaagggcctgaatttcatccccagaacctacacttcaaa 544
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 685 aaagtgcttgctttataggcacaaggacctgaatttcatccccagaacctacacttcaaa 744
Query: 545 ataaaataaaataaaataaaataaaataaaataaaataaaataaaataaataacataaaa 604
||||||||||||||||||||||||| ||||||||||||
Sbjct: 745 ataaaataaaataaaataaaataaa-taaaataaaata---------------------- 781
Query: 605 tagctagatttggagctggagggaaggcttaaggttaaagagtccaggctgctcgttcag 664
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 782 --gctagatttggagctggagggaaggcttaaggttaaagagcccaggctgctcgttcag 839
Query: 665 agtacctgggtttgattcccagcaccaataac 696
||||||||||||||||||||||||||||||||
Sbjct: 840 agtacctgggtttgattcccagcaccaataac 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space: 744996
Effective search space used: 744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_a23.g1 MSMg01no153_a23.g1 CHROMAT_FILE:
MSMg01no153_a23.g1 PHD_FILE: MSMg01no153_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:21 2005
(598 letters)
>mm_chr1_154457815_154458814
Length = 1000
Score = 986 bits (510), Expect = 0.0
Identities = 552/566 (97%), Gaps = 3/566 (0%)
Strand = Plus / Minus
Query: 20 cctagagat-acatggtttgagttaccagtcaggaatgtacctctgggaacttcatttct 78
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctagagataaaatggtttgagttaccagtcaggaatgtacctctgggaacttcatttct 506
Query: 79 gctgagcgccaaagtgatcctgctgagggtttttaatctatgttatatacctgataccta 138
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctgagctccaaagtgatcctgctgagggtttttaatctatgttatatacctgataccta 446
Query: 139 acgctgtagtcttccaaagaggactatgaacccagtatggagctggtctggctttactct 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acgctgtagtcttccaaagaggactatgaacccagtatggagctggtctggctttactct 386
Query: 199 gttgaatgtttattcaaagggaccaggcactcttcgtgtgccaaacgatgcagggagtgc 258
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 385 gttgaatgtttattcaaagggaccaggcactctttgtgtgccaaacgatacagggagtgc 326
Query: 259 gtgcgatcca-gcctcttgtgctgagatggtgaggtaggcttgctgtgtggctgtgttct 317
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgcgatccaagcctcttgtgctgagatggtgaggtaggcttgctgtgtggctgtgttct 266
Query: 318 gagaggtgctcctctcattgggactcaactgacaaaaggagtcaaatggaagtgcagctc 377
|||||||||||||||| | |||||||| |||||||||||||||||||| || | ||||||
Sbjct: 265 gagaggtgctcctctcgtcgggactcagctgacaaaaggagtcaaatgaaaat-cagctc 207
Query: 378 agtgggtctcagagtgtttgcctagtatgtatgaggccctgggttcagtcccctgggctg 437
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 206 agtgggtctcagagtgtttgcctagtatgtacgaggccctgggttcagtcccctgggctg 147
Query: 438 tataagccaagcatggtggcacataccaataatcccagaacttgagaggtggtagcagat 497
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tacaagccaagcatggtggcacataccaataatcccagaacttgagaggtggtagcagat 87
Query: 498 cagaaattcaaggtcatctctcctcagtgacagggctttctggaagtttgtgcccagctt 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 cagaaattcaaggtcatctctcctcagtgacagggctttctggaagtttgtgcccagctt 27
Query: 558 gggctagagacgtgtttgagacagag 583
||||||||||||||||||||||||||
Sbjct: 26 gggctagagacgtgtttgagacagag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 1000
Length adjustment: 10
Effective length of query: 588
Effective length of database: 990
Effective search space: 582120
Effective search space used: 582120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
