TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCACACGTTGCCATAAAGTATTCTGATTACATTCTATCTGATTACGTCA
CTGTTGCTCTTTACCATTCCTACCGACCACACCCCTTCATCCTTACTTGT
CACTTCAGCAGGCTCACGACTTCATTTTGTTTTGTGACCCATCTGGCTTA
ACTAGAGCTATCTGTGAACCCTGAAATGGACCTATCCATGGAACTTTTAA
ATAGTCTCTTCTTGTACTGTAATGGCTTCTGTTGTTTTGTCTAATGTGGG
TTCTTTGTTGTAAGCGGTTACCTCGCTCCTGACACAAAAGAAAGGGTTGC
TTTCATATGTTTGTTGAACTACTAGGGATGAATAAGTGAAGAACCCAGTA
TAAGGTTGAGGACCATTAATTAGTCATTACAGGAGGACTCTGAGCCACAG
ATGCCCAGAACTCATGAAACAGGCAGGGAGCCTGCCACCCCAGGCTGTGG
TAAGTCCTGTTCTGAATGTTTCTGGTTTGCAGCCTTTCCAAGGCCCGGGA
GGGACTTGGGTGTTACTCAAGGTTTACTGTTTGACATACCGTAGAACTTG
TGAAATTGTCTCTGCGGCCTTTTTTCTCCACATAGAGCCAACCCCCTAAG
GTTGTTACAGCCCAAGGGCAATGTGTATGAAGACTATAGCCCTTCTGCCA
GCTGCTCATCTCATGTTCCCCTAGACGCCAA

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTACCCCCGCAATTCTAGGGTGCTGAGGCAGTAGTGTGTGG
GCAAGTGGGGAGCACCCTCCTAGAGGCGGGGGAAGGGGAGGGGATACAGG
ACTTGTGCAGGGGAACTAGCGAAGCCTTTTCCCCCTCCCTCTTCTTCTCC
TCCACCCCCCCCCTCTCCCTCCCTCCCCTCCCCCCCCTTCTTTCCCCTTT
TCCTTCCTCTCTTTCCTTCCCCCCCCTCTCTCCTCCTATTTTTCCCCCCT
CCCGTTCCTCTTCCCTCCCCCCCTTTTCTTCCCTCCTCCTCTCTCTCCCC
TCTTTCCTCTTCCTCTTTTTCTTTCCCCCCCTCCCCCCCCTCCCCCCCTT
CCCCCTTTCTCTTTTCTTCTCCCCCCCCCCCCATCCTTTTTCCTTCTTTT
TCTCCCCTTCTTCTCTCTTTTTTCCCCCCCTCTTCTTCCCCCTTTCTTCC
TTCCCTTCACCCCCTTTTTCCCCCCCCCCCTTTCCTTCTCTCCTCTTCCT
CCCCCTCTCTCCTCCCTCCCCCCCCCCCCCCCTCTCTCCCCCCCTCTCAT
TCTCTCCTTTCCTCTTCTCTTTTTTTCCTTTTTCCCTCTTTCCCTCTCCC
CCCCCTTCCCCCCCCCTTCTTCTCCTTTTTCTCCCCCCCCCCTCCCCTTC
CTCTCCTTCTCCCCTCCTTCCCTCTCTTCCCTCTTTTCCTTCCCTTCCCC
TTCTTTTTTCTTCCTCTTCCCCCCCTTCTCTTCCCTCCCCTCCTCCCTTC
TTTTTTTCCCCC

Query= MSMg01no153_h12.b1 MSMg01no153_h12.b1 CHROMAT_FILE:
MSMg01no153_h12.b1 PHD_FILE: MSMg01no153_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:51 2005
         (508 letters)



>mm_chr1_108797362_108798269
          Length = 908

 Score =  928 bits (480), Expect = 0.0
 Identities = 495/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacacgttgccataaagtattctgattacattctatctgattacgtcactgttg 64
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacacggggacataaagtattctgattacattctatctgattacgtcactgttg 264

                                                                       
Query: 65  ctctttaccattcctaccgaccacaccccttcatccttacttgtcacttcagcaggctca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctttaccattcctaccgaccacaccccttcatccttacttgtcacttcagcaggctca 324

                                                                       
Query: 125 cgacttcattttgttttgtgacccatctggcttaactagagctatctgtgaaccctgaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgacttcattttgttttgtgacccatctggcttaactagagctatctgtgaaccctgaaa 384

                                                                       
Query: 185 tggacctatccatggaacttttaaatagtctcttcttgtactgtaatggcttctgttgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggacctatccatggaacttttaaatagtctcttcttgtactgtaatggcttctgttgtt 444

                                                                       
Query: 245 ttgtctaatgtgggttctttgttgtaagcggttacctcgctcctgacacaaaagaaaggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgtctaatgtgggttctttgttgtaagcggttacctcgctcctgacacaaaagaaaggg 504

                                                                       
Query: 305 ttgctttcatatgtttgttgaactactagggatgaataagtgaagaacccagtataaggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgctttcatatgtttgttgaactactagggatgaataagtgaagaacccagtataaggt 564

                                                                       
Query: 365 tgaggaccattaattagtcattacaggaggactctgagccacagatgcccagaactcatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgaggaccattaattagtcattacaggaggactctgagccacagatgcccagaactcatg 624

                                                                       
Query: 425 aaacaggcagggagcctgccaccccaggctgtggtaagtcctgttctgaatgtttctggt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 625 aaacaggcagggagcctgccaccccaggctgtggtaagtcctgttctgaatgcctctggt 684

                               
Query: 485 ttgcagcctttccaaggccc 504
           ||||||||||||||||||||
Sbjct: 685 ttgcagcctttccaaggccc 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)