BAC Information

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BAC

Clone NameMSMg01-153I18
Chromosome1 (Build37)
Map Location 115,281,377 - 115,391,496
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153I18.T7 (MSMg01no153_i18.b1)MSMg01-153I18.TJ (MSMg01no153_i18.g1)
ACCAG355114AG355115
length721721
length of high quality
(start - end)
486 (60 - 545)492 (66 - 557)
definitionCHROMAT_FILE: MSMg01no153_i18.b1 PHD_FILE: MSMg01no153_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:56 2005CHROMAT_FILE: MSMg01no153_i18.g1 PHD_FILE: MSMg01no153_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,391,011 - 115,391,496)(115,281,377 - 115,281,868)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATGCGCGGAATTCCAGA
GTCTGTTACCTTGAAAGTGGATCAGGATTCATTCCAACGAGCCCATTTAT
GGGTGTGGATATGTATTGAGTGGACAACTACTTGTGTTTGCAGGTCCTTG
TGTCCTGGAGCAAATACTTGGACCAAGGGTACATGAGAGTGAAAGAAATA
GAGTTTATTCTGGAAAACAAAGGCACTGCTAAGAGGTGGATGGGTTAGAG
AACTGGGATAGATGTGATGCTATTGAAAATTCTACCTACAAGAGTCCTGA
GCCCTTGTGTGTCTTTTACATAGTTCCCACCTTCTACTCGATCATTGGGT
TTTCTCAAAAATCCTCATAGCTTCAGTTCTAATCTTTCTGCTGTCTTTTT
TCATATGCTAATATTGACACTCTTTTCTATGTCTCTCTGTCTATCTCTCT
ATTACTGTCTCCCTATGTCTCTGTCTCTCTGTCTCTGTCTCTCTTTCCCT
ATCTTACTTTTCTACCACTGTCTCTTTGGTTAACTCTGATGGTCTCTGCT
GAACATTACATCTTTATAAAGCTGCCTCTTGTTTGCAGATAAGTCTACTA
TAAACTACCTCATGTCCACTTTTTATTGTATATTTTATCTATTTACTTTT
CATACGTTACTCCTGTATTGCCTAGTTTTGTGTCACTTTGGCACACACTG
CCGTATTCCCAGCGTATATAT
GTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTGCGAAAAAATACACAATTAATGTAACAAGAACTCTGAGCAAATG
TGTTTATGAAAGCAGCTCTATAGCCAGATAGTCATAAATAGGATATGTGG
GAGGTGGGGTAAGGAGGACATCTCCAAGCCTGCAATTCATATTTTGTATT
TCATTTATGTTTGCATTTAAATAATTATGCATCTTGGGGCAAATAACTTC
TTGCATTTTTCTACCAGGAAAGGGGGAGAAAAAAATCTGCACACTATAGA
GGAACATCTCTATTATAGTCTTAATGTAATAAACACCCCCAAGCCTGTTT
ACAAATGCACGGATGAGACAGAATCTTAATGAACCGTTCCATAACCTAGT
GGTTAATGATCTGTAACAGTCTTTGTCAATGACAGTGATTGTGAACTAAC
TCTTTTAACTTCACGATCAATAGAGCATCCACAGCTCTGAGTTACCCCAA
CGGGCACTCTGGGCACAGAAGTCATTGTCAGATATTGCATGCTCTATGGA
TCACAGCTGTAAGGTCGTGGTCTGCTTTGCGTTTCTCTTCTTGTGTTTAA
ATCCTGACTTTCACCACAGGAAGCCCATGGTAGTTTGGAGATGAAACACA
GCTCCTATGACATGCTGCTACATAAAGGATTGCACAGCTTTAAAGGTAAA
TGCTATTCTCTGAAATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_i18.b1 MSMg01no153_i18.b1 CHROMAT_FILE:
MSMg01no153_i18.b1 PHD_FILE: MSMg01no153_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:56 2005
         (486 letters)



>mm_chr1_115390923_115391808
          Length = 886

 Score =  940 bits (486), Expect = 0.0
 Identities = 486/486 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgaaagtggatcaggattcattccaacgagcccatttatgggtgtggatatgtattga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cttgaaagtggatcaggattcattccaacgagcccatttatgggtgtggatatgtattga 515

                                                                       
Query: 61  gtggacaactacttgtgtttgcaggtccttgtgtcctggagcaaatacttggaccaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gtggacaactacttgtgtttgcaggtccttgtgtcctggagcaaatacttggaccaaggg 455

                                                                       
Query: 121 tacatgagagtgaaagaaatagagtttattctggaaaacaaaggcactgctaagaggtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tacatgagagtgaaagaaatagagtttattctggaaaacaaaggcactgctaagaggtgg 395

                                                                       
Query: 181 atgggttagagaactgggatagatgtgatgctattgaaaattctacctacaagagtcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atgggttagagaactgggatagatgtgatgctattgaaaattctacctacaagagtcctg 335

                                                                       
Query: 241 agcccttgtgtgtcttttacatagttcccaccttctactcgatcattgggttttctcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agcccttgtgtgtcttttacatagttcccaccttctactcgatcattgggttttctcaaa 275

                                                                       
Query: 301 aatcctcatagcttcagttctaatctttctgctgtcttttttcatatgctaatattgaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aatcctcatagcttcagttctaatctttctgctgtcttttttcatatgctaatattgaca 215

                                                                       
Query: 361 ctcttttctatgtctctctgtctatctctctattactgtctccctatgtctctgtctctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ctcttttctatgtctctctgtctatctctctattactgtctccctatgtctctgtctctc 155

                                                                       
Query: 421 tgtctctgtctctctttccctatcttacttttctaccactgtctctttggttaactctga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tgtctctgtctctctttccctatcttacttttctaccactgtctctttggttaactctga 95

                 
Query: 481 tggtct 486
           ||||||
Sbjct: 94  tggtct 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no153_i18.g1 MSMg01no153_i18.g1 CHROMAT_FILE:
MSMg01no153_i18.g1 PHD_FILE: MSMg01no153_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:57 2005
         (492 letters)



>mm_chr1_115281177_115282068
          Length = 892

 Score =  913 bits (472), Expect = 0.0
 Identities = 487/492 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacacaattaatgtaacaagaactctgagcaaatgtgtttatgaaagcagctctatagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacacaattaatgtaacaagaactctgagcaaatgtgtttatgaaagcagctctatagcc 260

                                                                       
Query: 61  agatagtcataaataggatatgtgggaggtggggtaaggaggacatctccaagcctgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatagtcataaataggatatgtgggaggtggggtaaggaggacatctccaagcctgcaa 320

                                                                       
Query: 121 ttcatattttgtatttcatttatgtttgcatttaaataattatgcatcttggggcaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatattttgtatttcatttatgtttgcatttaaataattatgcatcttggggcaaata 380

                                                                       
Query: 181 acttcttgcatttttctaccaggaaagggggagaaaaaaatctgcacactatagaggaac 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 acttcttgcatttttctaccaggaaagggggagagaaaaatctgcacactatagaggaac 440

                                                                       
Query: 241 atctctattatagtcttaatgtaataaacacccccaagcctgtttacaaatgcacggatg 300
           |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctctattagagtcacaatgtaataaacacccccaagcctgtttacaaatgcacggatg 500

                                                                       
Query: 301 agacagaatcttaatgaaccgttccataacctagtggttaatgatctgtaacagtctttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacagaatcttaatgaaccgttccataacctagtggttaatgatctgtaacagtctttg 560

                                                                       
Query: 361 tcaatgacagtgattgtgaactaactcttttaacttcacgatcaatagagcatccacagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaatgacagtgattgtgaactaactcttttaacttcacgatcaatagagcatccacagc 620

                                                                       
Query: 421 tctgagttaccccaacgggcactctgggcacagaagtcattgtcagatattgcatgctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgagttaccccaacgggcactctgggcacagaagtcattgtcagatattgcatgctct 680

                       
Query: 481 atggatcacagc 492
           ||||||| ||||
Sbjct: 681 atggatcgcagc 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)