Query= MSMg01no153_m14.b1 MSMg01no153_m14.b1 CHROMAT_FILE:
MSMg01no153_m14.b1 PHD_FILE: MSMg01no153_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:14 2005
(660 letters)
>mm_chr1_77544344_77545406
Length = 1063
Score = 650 bits (336), Expect = 0.0
Identities = 382/400 (95%), Gaps = 9/400 (2%)
Strand = Plus / Minus
Query: 6 gaattcctgag---atttccactgaagaaaggaaaggtt--attttggctcagagttgca 60
||||||||||| | || ||||||||||||||||||| | |||||||||||||||||
Sbjct: 397 gaattcctgagaaaa--tcaactgaagaaaggaaaggtttaactttggctcagagttgca 340
Query: 61 aaggtttctggtaca-tggcaacttgcctccgttgtttccagacctgagatagagcagag 119
||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaggtttctggta-agtggtaacttgcctccgttgtttccagacctgagatagagcagag 281
Query: 120 cctcatggtggagactgcatagggaaactgaaccacttaactcctggaaagcagcagtta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cctcatggtggagactgcatagggaaactgaaccacttaactcctggaaagcagcagtta 221
Query: 180 taaaacaaacaagaagagctgatgagatggttcagtgggtaagagcactgactactcttc 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 taaaacaaacaagaacagctgatgagatggttcagtgggtaagagcactgactactcttc 161
Query: 240 cgaaggtcctgagttcaaatcccagcatccacatggtagcttacaaccacccgtaatgag 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 160 cgaaggtcctgagttcaaatcccagcatccacatggtagcttacaaccacctataatggg 101
Query: 300 atctgacaccttcttctggtgcacctgaagacagctacagtgtacttatgtaataaatct 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 100 atctgacaccttcttctggtgcacctgaagacagctacagtgtatttatgtaataaatct 41
Query: 360 ttgggccagagcaagcagggactaaacaggggaggttgac 399
||||||||||||||||||||||||||| ||||||||||||
Sbjct: 40 ttgggccagagcaagcagggactaaacgggggaggttgac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1063
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1053
Effective search space: 684450
Effective search space used: 684450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_m14.g1 MSMg01no153_m14.g1 CHROMAT_FILE:
MSMg01no153_m14.g1 PHD_FILE: MSMg01no153_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:14 2005
(579 letters)
>mm_chr1_77442438_77443416
Length = 979
Score = 1089 bits (563), Expect = 0.0
Identities = 575/579 (99%)
Strand = Plus / Plus
Query: 1 gagaatgcaggtttttaagcacctgcgatggctttccatgatctcagctttataaacatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagaatgcaggtttttaagcacctgcgatggctttccatgatctcagctttataaacatc 260
Query: 61 acacagatacagaggactactttcactaaagtggaaaaactcaatgctgctgtgaaacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacagatacagaggactactttcactaaagtggaaaaactcaatgctgctgtgaaacct 320
Query: 121 cgtcataaaaattaattaatagggctttgcaacctccccctctttttcctcccatacctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtcataaaaattaattaatagggctttgcaacctccccctctttttcctcccatacctt 380
Query: 181 ttatgattgttctctaaacctatcttaacctaaaataaaaactgtactggccccatcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatgattgttctctaaacctatcttaacctaaaataaaaactgtactggccccatcaag 440
Query: 241 tattaatgtttcagataaggacgtggataattaagtggttccatagcatcggaggttggg 300
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattaaggtcacagataaggacgtggataattaagtggttccatagcatcggaggttggg 500
Query: 301 aaagaaaatgagttacccacaatttcctcggtgcgatttttctctacactagcttcattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagaaaatgagttacccacaatttcctcggtgcgatttttctctacactagcttcattt 560
Query: 361 atcatggtctgagaatgtgtcgatactaccaaaacctgtgttgaggacggatccgtccac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcatggtctgagaatgtgtcgatactaccaaaacctgtgttgaggacggatccgtccac 620
Query: 421 tagccggacatgcaagaagaccacccacagtagccatccagggacttctccaaaaggaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagccggacatgcaagaagaccacccacagtagccatccagggacttctccaaaaggaat 680
Query: 481 agatgtagtgatccacatatgctgaatgtgctgcggagataggacagccacagagagctg 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 agatgtagtgatccacatatgctgaatgtgctgtggagataggacagccacagagagctg 740
Query: 541 ccacatcagtccaaacgcatccacccccacaccatccac 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccacatcagtccaaacgcatccacccccacaccatccac 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
