Query= MSMg01no154_c04.b1 MSMg01no154_c04.b1 CHROMAT_FILE:
MSMg01no154_c04.b1 PHD_FILE: MSMg01no154_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:41 2005
(591 letters)
>mm_chr1_11189386_11190376
Length = 991
Score = 1077 bits (557), Expect = 0.0
Identities = 578/585 (98%)
Strand = Plus / Plus
Query: 7 gaattcactagctctaagttgttggctcactttctagtaacatcatggtttctttcatgt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcactagctctaagttgttggctcactttctagtaacatcatggtttctttcatgt 266
Query: 67 tgaatgagttttaagtgttaccagggagctgttggttagtgctagggtgtgtgtgccact 126
|||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 267 tgaatgagttttaagtgtaaccagggagctgttggttaatgctggggtgtgtgtgccact 326
Query: 127 cctgctccatgtgggtggtggtctctccaacattttttgttttgaattcctttttgagac 186
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 327 cctgctccatgtgggtggtggtctctccaacagtttttgttttgaatttctttttgagac 386
Query: 187 agggtctcactacatgtccctggcattctaggaactcactatatagaccaggttgctcat 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agggtctcactacatgtccctggcattctaggaactcactatatagaccaggttgctcat 446
Query: 247 gaactcacagaaattgtactgggattaaaagcaccatacctggctactacaataaagctg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaactcacagaaattgtactgggattaaaagcaccatacctggctactacaataaagctg 506
Query: 307 cctttgtgttcttttccatcacagatagtgaaacccaactccggagagacatggttttct 366
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 507 cctttgtgttcttttccatcacagacagtgaaacccaactccggagagacatggttttct 566
Query: 367 gtcaaagtcttgtggccactgtctgtgccttctctgagcagctcatggctgccttaaacc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtcaaagtcttgtggccactgtctgtgccttctctgagcagctcatggctgccttaaacc 626
Query: 427 agatgtttgacaacagcaaggaaaatgaaatggagacttgtgaagccagcaggaggtggc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agatgtttgacaacagcaaggaaaatgaaatggagacttgtgaagccagcaggaggtggc 686
Query: 487 tggatcagattgcaaatgctggtgtgctttttcacttccagtcacttctgtcaccaaatt 546
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tggaccagattgcaaatgctggtgtgctttttcacttccagtcacttctgtcaccaaatt 746
Query: 547 tggtaagtgaccttatgactgccattgcctgcatctgcctgcaca 591
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tggtaagtgaccttatgactgccattgcctgcatctgcctgcaca 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_c04.g1 MSMg01no154_c04.g1 CHROMAT_FILE:
MSMg01no154_c04.g1 PHD_FILE: MSMg01no154_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:41 2005
(541 letters)
>mm_chr1_11259150_11260090
Length = 941
Score = 899 bits (465), Expect = 0.0
Identities = 480/487 (98%), Gaps = 4/487 (0%)
Strand = Plus / Minus
Query: 1 cattgccctctgcagacaagataaggaaagccacctgacttgtgttataatgagagtcat 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 487 cattgccctctgcagacaagataaggaaagccacccgacttgtgttataatgagagtcat 428
Query: 61 ttgttttggagccttaactacaatgaaagctttatattttgtgacacagtaattctaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttgttttggagccttaactacaatgaaagctttatattttgtgacacagtaattctaact 368
Query: 121 agaatatgggctattttaacttaagagacagcaacatataaaagtgtgcctctgtgctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agaatatgggctattttaacttaagagacagcaacatataaaagtgtgcctctgtgctag 308
Query: 181 tattatgtgcaactgtagggggggacaataatcattaaacaagaaattagtaatcaatgg 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 307 tattatgtgcaactgtagggggtgacaataatcattaaacaagaaattagtaatcaatgg 248
Query: 241 tgtgttcatgaattgcaatattaaatggacaggatggaaacacatcttttgtgctgctac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgtgttcatgaattgcaatattaaatggacaggatggaaacacatcttttgtgctgctac 188
Query: 301 aacagaatacaagagctagggtaatttataaatacatttagttcttaaaatggaggctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aacagaatacaagagctagggtaatttataaatacatttagttcttaaaatggaggctga 128
Query: 361 ggaagaagtccagggttgagggccttctactaggtgagtgcagtctggctgtg----tga 416
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 127 ggaagaattccagggttgagggccttctactaggtgagtgcagtctggctgtgtgattga 68
Query: 417 tctattgaaagcaaatggacaagaatcagagaacttactgtaacaacccattcctacaaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 tctattgaaagcaaatggacaagaatcagagaacttactgtaacaacccattcctacaaa 8
Query: 477 ctcaacc 483
|||||||
Sbjct: 7 ctcaacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
