BAC Information

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BAC

Clone NameMSMg01-154F22
Chromosome1 (Build37)
Map Location 168,256,832 - 168,257,144
singlet/doubletsinglet
Overlap genenone
Upstream geneIqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795
Downstream geneTada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154F22.T7 (MSMg01no154_f22.b1)MSMg01-154F22.TJ (MSMg01no154_f22.g1)
ACCAG355680AG355681
length728725
length of high quality
(start - end)
602 (39 - 640)313 (63 - 375)
definitionCHROMAT_FILE: MSMg01no154_f22.b1 PHD_FILE: MSMg01no154_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:59 2005CHROMAT_FILE: MSMg01no154_f22.g1 PHD_FILE: MSMg01no154_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTAAACGACTCCTATTTCGAGAGAGATCCGCGGAATTCAA
ATTGATTACTTCTTATCTCCTTGCACTAAGGTCAAATCAAAGTGGATCAA
GGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAAAAA
AGGAAAAGCCTCGAAGATATGAGCACAGGGGGAAAATTCCTGAATAGAAC
AGCAATGGCTTGTGCTGTAAGATCAAGAATTGACAAATGGGACCTCATAA
ATTTGCAAAGCTTCTGTAAGGCAAAAGACACCATCAATACGACAAAAAGG
CCACCAACAGATTGGTAAAGGATCTTTACCTATCCTAAATCAGATAGGGG
ACTAATATCCAATATATGTAAAGAACTCAAGAAGGTGGACTCCAGAAAAT
CAAATAACCCCATTAAAAATGGGGCTCAGAGCTAAACAAAGAATTCTCAC
CTGAGGAATACCGGATGGCTGAGAAGCACCTGAAAAAAATGTTCAGCATC
CTTAGCCATCAGGGAAATGCAAATCAAAAAAACCCTGAGATTCCACCTCA
CACCAGTCAGAATGGCTAAGGTCAAAAATTCAGGTGACAGCAGATGCTGG
TGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAA
GCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCACAAAATTGG
AAATAGTACTACCGGAGGATCCCACTAT
TGTGATAGGCCTGGCGGCCGCCTGGTTCATTACATGAGGTGAACTATAGA
AGGTTTCGNAAAATTCCTTCTGTGCCATCTTTGAACATTGTCTTGTACTC
TTCAGTTTAAGTGTCCTGCCTCACCAGGTTCCAGTGTCACGTTTCTACAT
TAGTTTGTGTTCTGTCGCCAAGTTCAACACACAAATTAAAAACTCCTTTT
CTGTTTATATATTTACTGTTCTAAAGGTAATCTTATTTTTGTTTTAGTTT
CATTTTTGTTGCTGTTATAAAGAGAAAATATGCCAAGAGAAAGCTTCTTT
TTTTTTTTTTTTTTTTTTTTTGCGGGGAGAAAGTGTTGTTTTAGTGGACA
ACTCCTGGTGATTCCATCACAGCATGGAAGTCAGGTCAGCGAGGACTTAA
AACATCTACTCCTATCTCACCTTCACTCAGGAGTATAGAGACATGATGCA
TACACACTTGCTTGCCAGCCCATCTTTTACTCTGGCAAAATTAATATACG
GCCTATACTAAGAAACGGCGCTGCACACCCTCATGTTGAGGCTTCCTTTA
TCATCCTACCAAGTTCAAAAAATTCCCTGGAAAATGAGACCATAGGACTA
ACTGATTTTGCCAGTTTTCCTTAACAACTCCTTTCCAGATTATTCTTCAC
CATGTTATCGTTCCATTTTATACTAACATTCTTGTATTACCATCCCACTT
ATTATACTTTCAATGCTTCTACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_f22.g1 MSMg01no154_f22.g1 CHROMAT_FILE:
MSMg01no154_f22.g1 PHD_FILE: MSMg01no154_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:59 2005
         (313 letters)



>mm_chr1_168256632_168257344
          Length = 713

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%), Gaps = 1/313 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccttctgtgccatctttgaacattgtcttgtactcttcagtttaagtgtcctgcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attccttctgtgccatctttgaacattgtcttgtactcttcagtttaagtgtcctgcctc 260

                                                                       
Query: 61  accaggttccagtgtcacgtttctacattagtttgtgttctgtcgccaagttcaacacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaggttccagtgtcacgtttctacattagtttgtgttctgtcgccaagttcaacacac 320

                                                                       
Query: 121 aaattaaaaactccttttctgtttatatatttactgttctaaaggtaatcttatttttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattaaaaactccttttctgtttatatatttactgttctaaaggtaatcttatttttgt 380

                                                                       
Query: 181 tttagtttcatttttgttgctgttataaagagaaaatatgccaagagaaagcttcttttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tttagtttcatttttgttgctgttataaagagaaaatatgccaagagaaagctttttttt 440

                                                                       
Query: 241 ttttttttttttttttttt-gcggggagaaagtgttgttttagtggacaactcctggtga 299
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ttttttttttttttttttttgcggggagaaagtgttgttttagtggacaactcctgatga 500

                        
Query: 300 ttccatcacagca 312
           |||||||||||||
Sbjct: 501 ttccatcacagca 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)