BAC Information

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BAC

Clone NameMSMg01-154H19
Chromosome1 (Build37)
Map Location 140,293,969 - 140,410,496
singlet/doubletdoublet
Overlap geneNek7
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600
Downstream geneLOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1, Zbtb41, Aspm, F13b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154H19.T7 (MSMg01no154_h19.b1)MSMg01-154H19.TJ (MSMg01no154_h19.g1)
ACCAG355766AG355767
length725723
length of high quality
(start - end)		421 (62 - 482)615 (66 - 680)
definitionCHROMAT_FILE: MSMg01no154_h19.b1 PHD_FILE: MSMg01no154_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:08 2005CHROMAT_FILE: MSMg01no154_h19.g1 PHD_FILE: MSMg01no154_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,410,076 - 140,410,496)(140,293,969 - 140,294,583)
sequence
TTTGCGGCCGCTATACGACTCCTATTCCAAGAGGATCCGCGGAATTCAGT
AAATTTCCTCAAATCAGCTCCTTTAGAGGATCGTGTTACGTATGCACATG
CTGACGCAATGATTCTAGTGACTCCAGGACACTTCTACACTGCACCCAAG
GAGGGAGAAAAACAAGGCTCTTTGATGGTGAATCCATAATAAACTAATTT
CTTTGGTAATTTGTTTTTTCATCCTGAGGGGGGAAAATCCTAATTTTTAA
AGATTCTTTTATTCTTGCTGATCTTTTGTGCGCAGTGAAGATTCTGATGA
TGTGCAATTCATGTTTTCTAAGGAAAGTACACTGTGTAACCTGTTAAAGT
TTGAATTCAGCTTGTCAGTGACCATTGGACCAAAAGAATCAAGGATATAT
ATGTATACATGTGTATATATATTTATAATAGAAATAATAGAGCAAGCATA
GAAGTGCTGACATGCTTTTAGTTGTTTACGGCAGGTTGGCCCTAGTTTTT
ACTTCTAGAGAATTATTACTCTGCTGTTGTTACGTACGTTTATTATTATA
AGCAGATTTGTTGTCCTCTAATAGCTGAGTATGAGAAGTAATTAAATATA
TGGTGGGCTATATGAATTTATTTTGCTCAGAAAATATGGGAGAACAAGTT
ATTTATCGTTGTAGGTATGTATTTTCTGACTTGCCTGATACTGAAGTTTG
TGTCGGGTGTAAAATAAGTCTAATT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTATTGTGCTTATTCCTTCCATTCTTCTGTGTTTCC
CCATTTACTCTAAAACATCTCCTCATGAGGCAGCTTACACATTCTACTCT
TAGAGAGTTTTGTATTTTATCTCTGTTAGCAAAGCTCAGAATAGGTTCTG
GTTGCTCAATAATAGACAAATTAAGCAAGTCAAAACGTACCCAAAGACTA
TGTCATTAGATATATTTCAGATATACCTACGTCTGGAGCTTCATAAACAC
TCATATAAGTTGCGTACTAAGAAGTCAAAGGGCATGAAAGTTTGCTTATG
TATTCCATACCTGCTTTCCCATTTTCCATTAAAGCTGTGTTCACCCCTCT
TGTCTTACCAAGACCTCCTATTAAGTCTGGTGACTTCATGTTTTGAGGTG
GGATTTCTGGGTTGCCTTTCATTGATTTGGTATCTAATCTTGGACAAGTC
AATTAGCTTTGATGTAACTCTTTTCCACTTCCTTTAGGTAAAGTAAAAAT
GTCCTGGGCAAAATAGAAAAATCCACAGAGAAACGTTATTGTTAGTCTAT
ATTATTTATAGCATCACAGAAAAAGTAAAATTATGTTATCAGGCAGTATT
CTTGTTGGTTATATTATTTAATATGAATATAGAGAATGAATTTATGGACT
ATTATTATTGTCATGGTATAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_h19.b1 MSMg01no154_h19.b1 CHROMAT_FILE:
MSMg01no154_h19.b1 PHD_FILE: MSMg01no154_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:08 2005
         (421 letters)



>mm_chr1_140409964_140410784
          Length = 821

 Score =  806 bits (417), Expect = 0.0
 Identities = 420/421 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcagctcctttagaggatcgtgttacgtatgcacatgctgacgcaatgattctagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aatcagctcctttagaggatcgtgttacgtatgcacatgctgacgcaatgattctagtga 474

                                                                       
Query: 61  ctccaggacacttctacactgcacccaaggagggagaaaaacaaggctctttgatggtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ctccaggacacttctacactgcacccaaggagggagaaaaacaaggctctttgatggtga 414

                                                                       
Query: 121 atccataataaactaatttctttggtaatttgttttttcatcctgaggggggaaaatcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atccataataaactaatttctttggtaatttgttttttcatcctgaggggggaaaatcct 354

                                                                       
Query: 181 aatttttaaagattcttttattcttgctgatcttttgtgcgcagtgaagattctgatgat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 353 aatttttaaagattcttttattcttgctgatcttttgtgcgcagtgaagattctgatggt 294

                                                                       
Query: 241 gtgcaattcatgttttctaaggaaagtacactgtgtaacctgttaaagtttgaattcagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gtgcaattcatgttttctaaggaaagtacactgtgtaacctgttaaagtttgaattcagc 234

                                                                       
Query: 301 ttgtcagtgaccattggaccaaaagaatcaaggatatatatgtatacatgtgtatatata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ttgtcagtgaccattggaccaaaagaatcaaggatatatatgtatacatgtgtatatata 174

                                                                       
Query: 361 tttataatagaaataatagagcaagcatagaagtgctgacatgcttttagttgtttacgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tttataatagaaataatagagcaagcatagaagtgctgacatgcttttagttgtttacgg 114

            
Query: 421 c 421
           |
Sbjct: 113 c 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no154_h19.g1 MSMg01no154_h19.g1 CHROMAT_FILE:
MSMg01no154_h19.g1 PHD_FILE: MSMg01no154_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:08 2005
         (615 letters)



>mm_chr1_140293769_140294783
          Length = 1015

 Score = 1174 bits (607), Expect = 0.0
 Identities = 613/615 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattgtgcttattccttccattcttctgtgtttccccatttactctaaaacatctcctca 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattgtgcttattgcttccattcttctgtgtttccccatttactctaaaacatctcctca 260

                                                                       
Query: 61  tgaggcagcttacacattctactcttagagagttttgtattttatctctgttagcaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaggcagcttacacattctactcttagagagttttgtattttatctctgttagcaaagc 320

                                                                       
Query: 121 tcagaataggttctggttgctcaataatagacaaattaagcaagtcaaaacgtacccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagaataggttctggttgctcaataatagacaaattaagcaagtcaaaacgtacccaaa 380

                                                                       
Query: 181 gactatgtcattagatatatttcagatatacctacgtctggagcttcataaacactcata 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 gactatgtcattagatatatttcagatatacctacttctggagcttcataaacactcata 440

                                                                       
Query: 241 taagttgcgtactaagaagtcaaagggcatgaaagtttgcttatgtattccatacctgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagttgcgtactaagaagtcaaagggcatgaaagtttgcttatgtattccatacctgct 500

                                                                       
Query: 301 ttcccattttccattaaagctgtgttcacccctcttgtcttaccaagacctcctattaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcccattttccattaaagctgtgttcacccctcttgtcttaccaagacctcctattaag 560

                                                                       
Query: 361 tctggtgacttcatgttttgaggtgggatttctgggttgcctttcattgatttggtatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctggtgacttcatgttttgaggtgggatttctgggttgcctttcattgatttggtatct 620

                                                                       
Query: 421 aatcttggacaagtcaattagctttgatgtaactcttttccacttcctttaggtaaagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatcttggacaagtcaattagctttgatgtaactcttttccacttcctttaggtaaagta 680

                                                                       
Query: 481 aaaatgtcctgggcaaaatagaaaaatccacagagaaacgttattgttagtctatattat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaatgtcctgggcaaaatagaaaaatccacagagaaacgttattgttagtctatattat 740

                                                                       
Query: 541 ttatagcatcacagaaaaagtaaaattatgttatcaggcagtattcttgttggttatatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttatagcatcacagaaaaagtaaaattatgttatcaggcagtattcttgttggttatatt 800

                          
Query: 601 atttaatatgaatat 615
           |||||||||||||||
Sbjct: 801 atttaatatgaatat 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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