Query= MSMg01no154_k23.b1 MSMg01no154_k23.b1 CHROMAT_FILE:
MSMg01no154_k23.b1 PHD_FILE: MSMg01no154_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:23 2005
(588 letters)
>mm_chr1_69333143_69334130
Length = 988
Score = 1114 bits (576), Expect = 0.0
Identities = 582/584 (99%)
Strand = Plus / Minus
Query: 5 gaattcatcgccaattccggtcatcctttggttccttggttacaggacaaagagatggtt 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gaattcatcgccaactctggtcatcctttggttccttggttacaggacaaagagatggtt 695
Query: 65 tggtaagcaagggaatatttgctccttgattatctcttctagagcttctcttcccatgta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tggtaagcaagggaatatttgctccttgattatctcttctagagcttctcttcccatgta 635
Query: 125 gctctcagtctaatactaatatgcccagtcattctctatttggaagattattttaatttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gctctcagtctaatactaatatgcccagtcattctctatttggaagattattttaatttg 575
Query: 185 cagaaaaatgaaaaggaacgcgtaatgaaaggggatatgcctgttagatatcacaggcaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cagaaaaatgaaaaggaacgcgtaatgaaaggggatatgcctgttagatatcacaggcaa 515
Query: 245 ttccaactggattaagaaataaacagcatgtaggataacctacttgttcattgacaatca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ttccaactggattaagaaataaacagcatgtaggataacctacttgttcattgacaatca 455
Query: 305 atagtagttacttcacaacacatcttataggtcatctttgtggggcatgccaccataaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atagtagttacttcacaacacatcttataggtcatctttgtggggcatgccaccataaga 395
Query: 365 agaattttataaactagacaggggacacagccagaccattgccttttgaatgaactttta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agaattttataaactagacaggggacacagccagaccattgccttttgaatgaactttta 335
Query: 425 tctcaggatgatttgttaaaattagcttgcttcctcataataatcccagagctgacttct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tctcaggatgatttgttaaaattagcttgcttcctcataataatcccagagctgacttct 275
Query: 485 gaatacatccctttgcttgtgcttgatgatatttctgagactctaaagaggcaaagaggc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gaatacatccctttgcttgtgcttgatgatatttctgagactctaaagaggcaaagaggc 215
Query: 545 agtaactgccttttttcttttctttctttttttttttttttttt 588
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 agtaactgccttttttcttttctttctttttttttttttttttt 171
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_k23.g1 MSMg01no154_k23.g1 CHROMAT_FILE:
MSMg01no154_k23.g1 PHD_FILE: MSMg01no154_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:23 2005
(509 letters)
>mm_chr1_69159508_69160416
Length = 909
Score = 965 bits (499), Expect = 0.0
Identities = 505/509 (99%), Gaps = 4/509 (0%)
Strand = Plus / Plus
Query: 1 acagaattctaagtaacagatattctaatcaaagaacaaaataaaaacttttaaaattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagaattctaagtaacagatattctaatcaaagaacaaaataaaaacttttaaaattca 260
Query: 61 aatgtttagaaaaaaatttttttaaaaacttaattacaaaaaaaaatgtttctgctgcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtttagaaaaaaatttttttaaaaacttaattacaaaaaaaaatgtttctgctgcat 320
Query: 121 ttttagtgtagtatccaaaagagatcttccaaagaacattttactctgggttagtattat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttagtgtagtatccaaaagagatcttccaaagaacattttactctgggttagtattat 380
Query: 181 ttacattctgtgtgaatgattaatcatcatttttataagcagtagggaggaatgtctgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacattctgtgtgaatgattaatcatcatttttataagcagtagggaggaatgtctgtc 440
Query: 241 caaattttaaaagacatttttagtttatggtaaagatggcaaagcattttaagctgtata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaattttaaaagacatttttagtttatggtaaagatggcaaagcattttaagctgtata 500
Query: 301 ggcagaagagcatcttacaaaatgttaggcaagaagagagaaagaaagaaagaaagaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcagaagagcatcttacaaaatgttaggcaagaagagagaaagaaagaaagaaagaaag 560
Query: 361 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 620
Query: 421 aaagaaagaaagaaagaaagaaaggaaggaagagagagagagagagaaagagagaaagag 480
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagaaagaaagaaagaaag----gaaggaagagagagagagagagaaagagagaaagag 676
Query: 481 agagagagagagggagggagggagggagg 509
|||||||||||||||||||||||||||||
Sbjct: 677 agagagagagagggagggagggagggagg 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 168
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
