BAC Information

Click to search

BAC

Clone NameMSMg01-155A22
Chromosome1 (Build37)
Map Location 134,848,708 - 134,849,185
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2
Downstream geneMdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155A22.T7 (MSMg01no155_a22.b1)MSMg01-155A22.TJ (MSMg01no155_a22.g1)
ACCAG356180AG356181
length741744
length of high quality
(start - end)		59 (265 - 323)487 (72 - 558)
definitionCHROMAT_FILE: MSMg01no155_a22.b1 PHD_FILE: MSMg01no155_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:52 2005CHROMAT_FILE: MSMg01no155_a22.g1 PHD_FILE: MSMg01no155_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAACGCNGCCGG
AANNCCANNNNNCTTAACTGGACCCGAGGAAGCCACNCAACGGCGCAGAG
CGGCNCCCAGNGGCCGGGAAGCACCCTTNCNCAAGNGANGGGGCCCGGNG
NCCAAGCTACAGAACCCGGGAGGCGGGGCAAAGACGGCCCGAGACGNCAC
CCCAGNANCCCNCGGAGCACCGGNGCCCGNACAGCAAGAAAAGCGAGCCA
GACGGGGTTTTTCAGCAGCCCAGCAGGAACAATGTGACTCTGAGGAGCAT
GCCTGGGATTTGACCTCTGTCCTGTTTTTTTTTCACACAANCCCCGAACA
CCCCACGGCTGCCTGTGGTCCTCCCCCCCAGCCCATCCTCATCTCTGACC
TCATTGGATCCTCACTATCAGCTTTTAGCCACCTCGCTCACTTCCTGAAT
CCAGAGATGCTGTGCGGTCTGTCTATAAAAATCATACTGCTCATCAGACT
TACCAAAATGCTTGATTACAGGACGACATGATAGGACAGGTCAATTCCTG
CAAACCCACTTTCCATTGCATCCCACATCTGTGTACCCCCCTACTTCTAC
ATGATTAAGGATCCACCTTATCCAGGCCGCTTGATACATGGTTATAGGGA
CTGATCCCCAGCCTCTTTTTTTTTTTTTACAATCGCCTGCCCCCCTTTTT
TTAACCCATTCTGACTGCCCTCCCCCTGTTTTCCCGCCCTN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTGGTGCCAGGCACACTAGCTTTAGGGA
TTCAGATGGAATCGGGACCCGAATTCAGCCCTGGCCAGGCCAGGTGGGCA
GAGCTGTGTGTGACAGTGTGGGATGGACCCTGTGACCTCGTCTACACAGC
TGCTCCAAGGCTTGCAACATCTCACTCCCAGCACAGTGATGCCTGCTGGG
GTCCGCTGAGTCTGGACCTAGGGCCCTGCAGCCAGCAGTAGAGAAGACTT
GGAGTTTCAAACCTGGCCCAGCTGAAAGGGGCACCGAGGTGGCAGGGTTT
CCCTGCTAAACTGAGGAAGAATTATGTTCTGACGTTTCTGCCTGCATGAT
CCCAGGTTTTCTCCACCGGCATCAAGAGCCTGGGGTTTCCACCAGGGCAG
GGAAGCATCTTAGCCCCAGCTTTCACACCGTCCCTGTGGGCTGTGGCTTG
GGGATAGGCTTCACCACACACCACAGGAAAGGAGGCGTCTGAGGTCACAG
CGGCCACAGCTCTGCGAACCATTAGACTCTGGCTCACACTCTGGGCCTGA
GACAGGGTAAGTCACGTGTCCTTTCTTTGCGTATAAAACAACGCTAGTGC
TTTCCACCCCCGCCAGCACAGTGCCCCGCTTCAGGCTGTGAAACTGCTTC
AAGGCACACTGTTTTTGCCCCTCCCCTTCCTATTTTTGCCCGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_a22.g1 MSMg01no155_a22.g1 CHROMAT_FILE:
MSMg01no155_a22.g1 PHD_FILE: MSMg01no155_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:52 2005
         (487 letters)



>mm_chr1_134848320_134849206
          Length = 887

 Score =  849 bits (439), Expect = 0.0
 Identities = 471/487 (96%), Gaps = 9/487 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggtgccaggcacactagctttagggattcagatggaatcgggacccgaattcagccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 cttggtgccaggcacactagctttagggattcagatggaatcgggacccgaattcagccc 807

                                                                       
Query: 61  tggccaggccaggtgggcagagctgtgtgtgacagtgtgggatggaccctgtgacctcgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tggccaggccaggtgggcagagctgtgtgtgacagtgtgggatggaccctgtgacctcgt 747

                                                                       
Query: 121 ctacacagctgctccaaggcttgcaacatctcactcccagcacagtgatgcctgctgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 746 ctacacagctgctccaaggcttgcaacatctcactcccagcacagtgatgcctgctggg- 688

                                                                       
Query: 181 tccgctgagtctggacctagggccctgcagccagcagtagagaagacttggagtttcaaa 240
                   |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 687 --------gtctggacctagggccctgcagccagtagtagagaagacttggagtttcaaa 636

                                                                       
Query: 241 cctggcccagctgaaaggggcaccgaggtggcagggtttccctgctaaactgaggaagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cctggcccagctgaaaggggcaccgaggtggcagggtttccctgctaaactgaggaagaa 576

                                                                       
Query: 301 ttatgttctgacgtttctgcctgcatgatcccaggttttctccaccggcatcaagagcct 360
           ||||||||||||| |||||||||| |||||||||||||| || |||||||||| ||||||
Sbjct: 575 ttatgttctgacgcttctgcctgcgtgatcccaggttttttctaccggcatcaggagcct 516

                                                                       
Query: 361 ggggtttccaccagggcagggaagcatcttagccccagctttcacaccgtccctgtgggc 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 515 ggggtttccaccagggcagggaagcatcttagccccagctttcacaccatccctgtgggc 456

                                                                       
Query: 421 tgtggcttggggataggcttcaccacacaccacaggaaaggaggcgtctgaggtcacagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgtggcttggggataggcttcaccacacaccacaggaaaggaggcgtctgaggtcacagc 396

                  
Query: 481 ggccaca 487
           |||||||
Sbjct: 395 ggccaca 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |