Query= MSMg01no155_b02.b1 MSMg01no155_b02.b1 CHROMAT_FILE:
MSMg01no155_b02.b1 PHD_FILE: MSMg01no155_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:53 2005
(501 letters)
>mm_chr1_138849053_138849947
Length = 895
Score = 913 bits (472), Expect = 0.0
Identities = 489/498 (98%), Gaps = 6/498 (1%)
Strand = Plus / Plus
Query: 4 ggaattcaccagagtcttacttctggcggagacttaaagataagtttcccctagctacca 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaccagagccttacttctggcggagacttaaagataagtttcccctagctacca 263
Query: 64 cgagcactccgaatttctcttgcaatctccagccaacttctagcaaacttctccctcctc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgagcactccgaatttctcttgcaatctccagccaacttctagcaaacttctccctcctc 323
Query: 124 agccctcctccctccccgcgcctcctcctttccagcaagggtagtctcccgggtttgccc 183
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agccctcc------cccgcgcctcctcctttccagcaagggtagtctcccgggtttgccc 377
Query: 184 ttcccggctttgactttgtcttcaagtgttgattgacggttgcaattacaaaggatgata 243
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttcccggttttgactttgtcttcaagtgttgattgacggttgcaattacaaaggatgata 437
Query: 244 gctcggggaggctcccgcagccttgatgagcccgagaagcgcaggcctggcatattttat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gctcggggaggctcccgcagccttgatgagcccgagaagcgcaggcctggcatattttat 497
Query: 304 ccagcctcggcgttcccggggccgtgcgcgcccccattcacccagctggctggagctgag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccagcctcggcgttcccggggccgtgcgcgcccccattcacccagctggctggagctgag 557
Query: 364 gcggtctcgcactccccacccacgaggacgcaactgcaagttctcctccggtcttctccc 423
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 558 gcggtctcgcactccccacccacgaggatgcaactgcaagttctcctccggtcttctccc 617
Query: 424 ttcccgaggttgcgcgccgcgccgctcggtggagcgctcacggagagcaagcctgccctt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttcccgaggttgcgcgccgcgccgctcggtggagcgctcacggagagcaagcctgccctt 677
Query: 484 gacctgacctaagaagcg 501
||||||||||||||||||
Sbjct: 678 gacctgacctaagaagcg 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 895
Length adjustment: 10
Effective length of query: 491
Effective length of database: 885
Effective search space: 434535
Effective search space used: 434535
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_b02.g1 MSMg01no155_b02.g1 CHROMAT_FILE:
MSMg01no155_b02.g1 PHD_FILE: MSMg01no155_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:53 2005
(402 letters)
>mm_chr1_138945677_138946478
Length = 802
Score = 770 bits (398), Expect = 0.0
Identities = 401/402 (99%)
Strand = Plus / Minus
Query: 1 tctgttcaataagaaaagtagatacgtaaggcatgatgccgtacatccttcatcccaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tctgttcaataagaaaagtagatacgtaaggcatgatgccgtacatccttcatcccaaca 700
Query: 61 cctgggaggcagagacacactggactcctgtgaactcaaggccagtctggtctgcatagc 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 699 cctgggaggcagagacacaccggactcctgtgaactcaaggccagtctggtctgcatagc 640
Query: 121 aagtttgagaccagcaagggctactacatagtgagactaaataaataaataacaaaaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aagtttgagaccagcaagggctactacatagtgagactaaataaataaataacaaaaaca 580
Query: 181 aaaaaccataacaacctctaaccctaggcaggaaacgcacttcaattcctcagatagata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aaaaaccataacaacctctaaccctaggcaggaaacgcacttcaattcctcagatagata 520
Query: 241 ataggggacattgcaaaatgtcttgaaggttcagcagcagaagcagcagatacatgcact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ataggggacattgcaaaatgtcttgaaggttcagcagcagaagcagcagatacatgcact 460
Query: 301 gtctgaagcgccatgactaggctatttgctaacttagaaaactgtttcattccattggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gtctgaagcgccatgactaggctatttgctaacttagaaaactgtttcattccattggca 400
Query: 361 cagttacctaaaaacaaagacttaaagttgctgatagacaca 402
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cagttacctaaaaacaaagacttaaagttgctgatagacaca 358
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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