BAC Information

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BAC

Clone NameMSMg01-155B06
Chromosome1 (Build37)
Map Location 139,012,683 - 139,013,268
singlet/doubletsinglet
Overlap geneLOC100042567
Upstream geneCacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3
Downstream geneLOC100043143, Ptprc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155B06.T7 (MSMg01no155_b06.b1)MSMg01-155B06.TJ (MSMg01no155_b06.g1)
ACCAG356195AG356196
length851754
length of high quality
(start - end)
176 (47 - 222)564 (77 - 640)
definitionCHROMAT_FILE: MSMg01no155_b06.b1 PHD_FILE: MSMg01no155_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:54 2005CHROMAT_FILE: MSMg01no155_b06.g1 PHD_FILE: MSMg01no155_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGATCTAGGGAGGAGCCTCTGGGGGAAAGGCAGCCCAGCCCATG
ACCTGGAAAGATCAGGTTGGGGCAGGGTGTACCAGGTAGGGACTGAGGGA
TGCTGGGAGAACCTGGAGGCCAGGTCTGCTTTGATATGTAAAATATGCAC
CTCAGTCCTTATCCTGGGTCTAGAATACTCCTAACAGCTTGTTTTGTTTT
TGTTTGTTTGTTGTTTGGGTTGTTGTTTTGTTTTGTTTTGTTTTGCCTCC
CCCCCCCCCCACCCCCACTTTTTTTCTCACTCCCTTTTTTTCCCCTTCTC
CCCTCCCTCATTCTCTTTTCCTACTTTCCAAACCTATCCTNCCCACCCCC
CCCCGCCTCCCCCTCCCCCCCACCTTCCTCCCTCTCCCTTCCTTTTTCCT
CCCCCCCNNNNNNNNCNNNCAAGCAAGAGCTTGCCTGTNTTCCAGGCCGC
AGCGTCCCCCTCCCCGCTTTCTTTTTCCCCGCGCGATGCTCCCTCTCGGC
CCCCCCCCCCTTCTTTTTCTCCCCCCTATCCCCCGCCCCCCTGCTCTCCC
CCCCCTCTGCGTCTACCTCCCCCTCCTCCCACTTTCCTCCCTCTTCTCTT
ACCATGCCGTCTTCCTCGCGTGGGTCACTCATTCCCCCACCGCCATCCTT
CCCCCCTCCGCTTCTCCCCCTCTCTGTCTACCTCTACCCCTCCCTCCCAC
GCTACTCTGCTCCCCCCTCTCATTCCTCTCTCCCCCCTCCCTCCGCCGTT
CTCCACCCACCCTCTCGACCCCCGCCTCTTTCACCCTTCTGCTCTCTCCC
G
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATTGATGATTACTAAAGATGTG
CTCTAAAGAAGCATAAAAGGAGATCGCTAATAATCATATTTTAAGTAGTA
ACGTTAATTTTGGTGAATTTCTTTCTAGTCTTTTTGTCTTCCTTTGCTAA
TAACTTTACATGACATTTAGGGCATCAAATAACAGAAGAAGATGTGAGGA
GAAAATTAGTTGAAGAACATGAATAATGAAAATAAAAAAATTAAAACATC
CAAACAAGTAAGTGTGCCTTCGAACAACCATGATCATGTTCTCCACCTAG
TAGGTAGGCAAGTATGAGGTAAAAGGTAACACTGGCTATGAGGGAAGACC
TAGGCAAAGGCATCCTTCCAGTGCTGAGGGCATGAAAGTGGCCCAGTTTC
CCTGGTGCTGACACAAATGAAAAAAGAAGTTTTTACCAAATACTCAAGTC
CCAACAACCTGGTTGTCTGCCAGTAATTCAAGGTACAAATAAGGTTCCTT
TGGAAAAACAAAAACAAAAACAAAAGAAAAACAAAAAAACCCAGAAACAG
TTCATTTATCTCTCACCCGAAACAGCTGCACAAATGCCTTCTCTAGCAAT
AGTTACGTGAACTTTCCCTATTGTCAATGAAAGCTCACAGAAAAGACATA
TACTCAGACTTGCAATGTAATAAGTTTGAAGGCTATTCATAAGTACACCT
GGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_b06.g1 MSMg01no155_b06.g1 CHROMAT_FILE:
MSMg01no155_b06.g1 PHD_FILE: MSMg01no155_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:54 2005
         (564 letters)



>mm_chr1_139012506_139013469
          Length = 964

 Score = 1027 bits (531), Expect = 0.0
 Identities = 562/587 (95%), Gaps = 24/587 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattgatgattactaaagatgtgctc-----------------------taaagaagca 37
           |||||||||||||||||||||||||||                       ||||||||||
Sbjct: 178 acattgatgattactaaagatgtgctcattattttaaatttggcaaaaattaaagaagca 237

                                                                       
Query: 38  taaaaggagatcgctaataatcatattttaagtagtaacgttaattttggtgaatttctt 97
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 taaaaggagatcgctaataatcatattttaagtagtaacgttaattttggtgaatttctt 297

                                                                       
Query: 98  tctagtctttttgtcttcctttgctaataactttacatgacatttagggcatcaaataac 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tctagtctttttgtcttcctttgctaataactttacatgacatttagggcatcaaataac 357

                                                                       
Query: 158 agaagaagatgtgaggagaaaattagttgaagaacatgaataatgaaaataaaaaaatta 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agaagaagatgtgaggagaaaattagttgaagaacatgaataatgaaaataaaaaaatta 417

                                                                       
Query: 218 aaacatccaaacaagtaagtgtgccttcgaacaaccatgatcatgttctccacctagtag 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aaacatccaaacaagtaagtgtgccttcgaacaaccatgatcatgttctccacctagtag 477

                                                                       
Query: 278 gtaggcaagtatgaggtaaaaggtaacactggctatgagggaagacctaggcaaaggcat 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtaggcaagtatgaggtaaaaggtaacactggctatgagggaagacctaggcaaaggcat 537

                                                                       
Query: 338 ccttccagtgctgagggcatgaaagtggcccagtttccctggtgctgacacaaatgaaaa 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ccttccagtgctgagggcatgaaagtggcccagtttccctggtgctgacacaaatgaaaa 597

                                                                       
Query: 398 aagaagtttttaccaaatactcaagtcccaacaacctggttgtctgccagtaattcaagg 457
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 598 aagaagtttttaccaaatactcaagttccaacaacctggttgtctgccagtaattcaagg 657

                                                                       
Query: 458 tacaaataaggttcctttggaaaaacaaaaacaaaaacaaaagaaaaacaaaaaaaccca 517
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 658 tacaaataaggttcctttggaaaaacaaaaacaaaaacaaaagaaaaacaaaaaaacc-a 716

                                                          
Query: 518 gaaacagttcatttatctctcacccgaaacagctgcacaaatgcctt 564
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gaaacagttcatttatctctcacccgaaacagctgcacaaatgcctt 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)