BAC Information

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BAC

Clone NameMSMg01-155B12
Chromosome1 (Build37)
Map Location 97,561,631 - 97,562,203
singlet/doubletsinglet
Overlap geneSt8sia4
Upstream geneLOC100040685, LOC383603, Tmem157, LOC100041686, Rnu7-ps2
Downstream geneGm1833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155B12.T7 (MSMg01no155_b12.b1)MSMg01-155B12.TJ (MSMg01no155_b12.g1)
ACCAG356206AG356207
length724733
length of high quality
(start - end)
576 (69 - 644)529 (78 - 606)
definitionCHROMAT_FILE: MSMg01no155_b12.b1 PHD_FILE: MSMg01no155_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:55 2005CHROMAT_FILE: MSMg01no155_b12.g1 PHD_FILE: MSMg01no155_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAAGAGGATCCGCGGA
ATTCCTGTTAGAGGCGGAGGCTGGGGCTTGCGAATCGAGGCTCTTTGTTC
CCTTCAGAACTGATTGGGTTCCAAGGAGCTGGCGCTTAGACAAAGCGGCC
AAGCTTCTACAGGACTCCAGTGGTTTGGGACCCTAGCGAGCAGGAGTGGG
CGTGGCGATGAACACTATGTCCAAACCCTGCAAAGGAGTCATTCCCTTGC
TCGGATAAATTGCCTCCAGGAAGGAGGCCTGTATCCCGGGTGCCCCAAAG
GAAAATATCAGATCCAGGACACTCCACGTTTCACAGTGACATTTATTCTC
TGGCCTTTTTGGAAATCAAGGGAGGGTCTGCACAGCCCTGGCATCAGAGG
AGCTGCAGCCCCACAGCCACACAGCGACTGGGTTAGCTCTACTGAGCTGT
GCCTCCGCACCCTTTGCAAGCTGAGCTGCCAGTTCTTTCTTCCCAGTTCC
TATGAGAAGGCTTGAGGCCAGCGCTTGAGTTATCAAAACAGGAAGAGAGG
TGTACCGGGTGCCGTGCTGGTGTCTACCCTTTCTTCTTCAAGAACTAGTA
GTCAGAGCAGGATAATGAGAAGACTGGTGTGTGTGTGTGTGCGTGTGTGT
GTGCCTGTGTCCCCTCCTTCTCCTTCTCCCCTCCTCTCCTTTCTGCCCCT
CCTCCCCCCTTTATCTCCCCCCCC
CACTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAATGAGGAATACTGAATGGC
TGAGAAGCACCTGAAAAAATGTTCAACATCCGTAATCATCAGGGAATGCA
AATTAAAACAACCCTGAGATTCCACCTCATACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGG
ACGCTCTTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTTGAA
GTCAGTCTGGCAGTTCTTCAGAAAATAGAACATAGTACTACCGGAGGATC
CAGCAATTCCTCTCCTGGAACTATACCCAGATGTTCCAACTTGTAATTAG
GACACATGCTCTACTGTTTTCAAAGCAGCCATGTTTATAATAGTCAGAAG
CTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATTTACACAATGGAGTACTACTCAGCAATCAAAAACAATGAATTC
ATCAAATTCTTAGACAAATGGATGCATCTGGAGGATATCATCCTGAGTGA
GGCAACCCTGTCACAAAAGAACACACATGATATGTACTCCCTGATAAGGA
GATATTAGCCCCGATTCTTAGAATACCCAAGATACAATTCACAAAACACC
TGAAACTCCAGCATAAGGAAGTCCAAAGTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_b12.b1 MSMg01no155_b12.b1 CHROMAT_FILE:
MSMg01no155_b12.b1 PHD_FILE: MSMg01no155_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:55 2005
         (576 letters)



>mm_chr1_97561431_97562406
          Length = 976

 Score = 1077 bits (557), Expect = 0.0
 Identities = 569/573 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctggggcttgcgaatcgaggctctttgttcccttcagaactgattgggttccaaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ggctggggcttgcgaatcgaggctctttgttcccttcagaactgattgggttccaaggag 714

                                                                       
Query: 61  ctggcgcttagacaaagcggccaagcttctacaggactccagtggtttgggaccctagcg 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ccggcgcttagacaaagcggccaagcttctacaggactccagtggtttgggaccctagcg 654

                                                                       
Query: 121 agcaggagtgggcgtggcgatgaacactatgtccaaaccctgcaaaggagtcattccctt 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 agcaggagtgggcgtggtgatgaacactatgtccaaaccctgcaaaggagtcattccctt 594

                                                                       
Query: 181 gctcggataaattgcctccaggaaggaggcctgtatcccgggtgccccaaaggaaaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gctcggataaattgcctccaggaaggaggcctgtatcccgggtgccccaaaggaaaatat 534

                                                                       
Query: 241 cagatccaggacactccacgtttcacagtgacatttattctctggcctttttggaaatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cagatccaggacactccacgtttcacagtgacatttattctctggcctttttggaaatca 474

                                                                       
Query: 301 agggagggtctgcacagccctggcatcagaggagctgcagccccacagccacacagcgac 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 473 agggagggtctgcacagccctggcatcagaggagctgcagccccacagtcacacagcgac 414

                                                                       
Query: 361 tgggttagctctactgagctgtgcctccgcaccctttgcaagctgagctgccagttcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgggttagctctactgagctgtgcctccgcaccctttgcaagctgagctgccagttcttt 354

                                                                       
Query: 421 cttcccagttcctatgagaaggcttgaggccagcgcttgagttatcaaaacaggaagaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cttcccagttcctatgagaaggcttgaggccagcgcttgagttatcaaaacaggaagaga 294

                                                                       
Query: 481 ggtgtaccgggtgccgtgctggtgtctaccctttcttcttcaagaactagtagtcagagc 540
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 293 ggtgtaccgggtgccgtgctggtgtctaccctttcttctacaagaactagtagtcagagc 234

                                            
Query: 541 aggataatgagaagactggtgtgtgtgtgtgtg 573
           |||||||||||||||||||||||||||||||||
Sbjct: 233 aggataatgagaagactggtgtgtgtgtgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)