BAC Information

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BAC

Clone NameMSMg01-155C15
Chromosome1 (Build37)
Map Location 101,144,645 - 101,228,716
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
Downstream geneC230078M14Rik, LOC633295, EG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155C15.T7 (MSMg01no155_c15.b1)MSMg01-155C15.TJ (MSMg01no155_c15.g1)
ACCAG356257AG356258
length736736
length of high quality
(start - end)		666 (43 - 708)501 (73 - 573)
definitionCHROMAT_FILE: MSMg01no155_c15.b1 PHD_FILE: MSMg01no155_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:01 2005CHROMAT_FILE: MSMg01no155_c15.g1 PHD_FILE: MSMg01no155_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,144,645 - 101,145,306)(101,228,376 - 101,228,716)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACCAACCTAGTGAACCTGGGGTTTCTGCCTATCTCTGTCTCACCGTTA
TGAGATTCATACCAGTATTTACACATGTGCTGTAGAACAAGCTTAGATTC
TTGTGGTTGCATAGCAAGTAATCTATCACCTCAGCTACCTTACCTAGCTC
AAACATTTCATTCGTATACTATTTACTGTGTCTTTACACAATTGTTTTAT
TTCCAGTAATGGCTGAAAGTAAATTTATAAACAGGCACTTTCATAGGTTT
TTGTTATCGGTGTTCATTTGAGTAAGTCCCATAGTCTCCCACAAAACAAA
CACTTGATACAGACAGACAAAACATATAGTGCAAGCACCCAGATTACAAG
AAATCAATGATTTTGGTTTATTTCATTCAAAAATTTGTCAAGCAGTCTAA
TTGTTGAAGGTTTCTATGCATAGCAACCTACCATAATTCTTGATAACTTG
ATGATGTTTCTTAGTTTCAAACATCCCAAACAACTGCTGGTGGTGCTATT
GTGTCTAATACTACAAATTAAAGGTGGAAGATCACTTTAAATTCAAACAC
AATCTGTCTTTCATGAACATAACTATTCTGAAGTGTTAATGATCATAGAG
AGAAATGAAGGGATGTTCCTTTTGTTCCTTTGAAACAGACAACGCACACA
GAAATACATGTTAAAACAAGACATACAATGCAGAAG

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGACCACAGGGAGTGACACTATCAAGA
GGTCTGACCTTATTGGAGAAAATGTGGCCTTGTTGGAAGATTGTCACTGC
ATATGCAAGCTTTGAGGCCACTTAAGCTTTACACCACCCAGGGTATAAGA
GATCCTCACTTGGTTGCCTACAGAAAATAATCTCCTGCTAATACCTTTGG
TTCAAGATGTAGAATTTTCAGCTCTTCCAGTACCATATATTCCTGGACAC
TGCCAAAATTCCTCCAAGAAATAAAGGACAAAGCTTTTGAAACTGTAATC
CAGCCCAATTTAAATGGTTTCATTTATAAGAGTTTCCTTGGTCATGGTGT
TTCTTCACAGTAATAAAACCACAACTAAGACAGCAGGGCTGTAGCTGTTG
TTGGCTGCGTTTTTAGATTGGCTATAGTCATTTGGATTTTATCAGTTTTA
TACATTTAGATGCTGATTTCAGTGCTTTGGATAACACTTTTTGCCCATTG
ATCTCTCTTTCCCTCTCTGCCTATGGGGCCATAAGCTCTGGCGAGGAGCC
CGTCTTTTTGTCTTTTAGGGAGTCTACGCTTGGAGTCTGCCTGGCCTATA
TTAACTGTTTCACTAATCCTGTTTTTGCACTTTCCATTTCCCGCATGTCC
TGCCTTTTCCTTTTCTCTAAAGTACCCCCATATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_c15.b1 MSMg01no155_c15.b1 CHROMAT_FILE:
MSMg01no155_c15.b1 PHD_FILE: MSMg01no155_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:01 2005
         (666 letters)



>mm_chr1_101144441_101145506
          Length = 1066

 Score = 1265 bits (654), Expect = 0.0
 Identities = 660/662 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccaacctagtgaacctggggtttctgcctatctctgtctcaccgttatgagat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccaacctagtgaacctggggtttctgcctatctctgtctcaccgttatgagat 264

                                                                       
Query: 65  tcataccagtatttacacatgtgctgtagaacaagcttagattcttgtggttgcatagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcataccagtatttacacatgtgctgtagaacaagcttagattcttgtggttgcatagca 324

                                                                       
Query: 125 agtaatctatcacctcagctaccttacctagctcaaacatttcattcgtatactatttac 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtaatctaccacctcagctaccttacctagctcaaacatttcattcgtatactatttac 384

                                                                       
Query: 185 tgtgtctttacacaattgttttatttccagtaatggctgaaagtaaatttataaacaggc 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 tgtgtctttacacaattgttttatttccagtaatggctgaaagtaaatttgtaaacaggc 444

                                                                       
Query: 245 actttcataggtttttgttatcggtgttcatttgagtaagtcccatagtctcccacaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actttcataggtttttgttatcggtgttcatttgagtaagtcccatagtctcccacaaaa 504

                                                                       
Query: 305 caaacacttgatacagacagacaaaacatatagtgcaagcacccagattacaagaaatca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caaacacttgatacagacagacaaaacatatagtgcaagcacccagattacaagaaatca 564

                                                                       
Query: 365 atgattttggtttatttcattcaaaaatttgtcaagcagtctaattgttgaaggtttcta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgattttggtttatttcattcaaaaatttgtcaagcagtctaattgttgaaggtttcta 624

                                                                       
Query: 425 tgcatagcaacctaccataattcttgataacttgatgatgtttcttagtttcaaacatcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgcatagcaacctaccataattcttgataacttgatgatgtttcttagtttcaaacatcc 684

                                                                       
Query: 485 caaacaactgctggtggtgctattgtgtctaatactacaaattaaaggtggaagatcact 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caaacaactgctggtggtgctattgtgtctaatactacaaattaaaggtggaagatcact 744

                                                                       
Query: 545 ttaaattcaaacacaatctgtctttcatgaacataactattctgaagtgttaatgatcat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttaaattcaaacacaatctgtctttcatgaacataactattctgaagtgttaatgatcat 804

                                                                       
Query: 605 agagagaaatgaagggatgttccttttgttcctttgaaacagacaacgcacacagaaata 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agagagaaatgaagggatgttccttttgttcctttgaaacagacaacgcacacagaaata 864

             
Query: 665 ca 666
           ||
Sbjct: 865 ca 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no155_c15.g1 MSMg01no155_c15.g1 CHROMAT_FILE:
MSMg01no155_c15.g1 PHD_FILE: MSMg01no155_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:01 2005
         (501 letters)



>mm_chr1_101227816_101228716
          Length = 901

 Score =  551 bits (285), Expect = e-161
 Identities = 327/341 (95%)
 Strand = Plus / Minus

                                                                       
Query: 161 tcctgctaatacctttggttcaagatgtagaattttcagctcttccagtaccatatattc 220
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 901 tcctgctaatacctttggttcaagatgtagaattttaagctcttccagtaccatatattc 842

                                                                       
Query: 221 ctggacactgccaaaattcctccaagaaataaaggacaaagcttttgaaactgtaatcca 280
           |||||||||| ||  ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 841 ctggacactgtcatgattcctccaagaaataaaggaaaaagcttttgaaactgtaatcca 782

                                                                       
Query: 281 gcccaatttaaatggtttcatttataagagtttccttggtcatggtgtttcttcacagta 340
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 781 gcccaatttaaatggtttcatttataagagttttcttggtcatggtgtttcttcacagta 722

                                                                       
Query: 341 ataaaaccacaactaagacagcagggctgtagctgttgttggctgcgtttttagattggc 400
           |||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 721 ataaaaccccaactaagacagcagggctgtagctgttgttggttgtgtttttagattggc 662

                                                                       
Query: 401 tatagtcatttggattttatcagttttatacatttagatgctgatttcagtgctttggat 460
           ||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 661 tatagccatttgaattttatcagttttatacatttagatgctgatttcagtgttttggat 602

                                                    
Query: 461 aacactttttgcccattgatctctctttccctctctgccta 501
           |||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 601 aacactttttccccattgatttctctttccctctctgccta 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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