BAC Information

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BAC

Clone NameMSMg01-155D13
Chromosome1 (Build37)
Map Location 90,172,470 - 90,172,763
singlet/doubletsinglet
Overlap gene6430706D22Rik, LOC100038822
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766
Downstream geneTrpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155D13.T7 (MSMg01no155_d13.b1)MSMg01-155D13.TJ (MSMg01no155_d13.g1)
ACCAG356297AG356298
length736740
length of high quality
(start - end)
380 (65 - 444)495 (78 - 572)
definitionCHROMAT_FILE: MSMg01no155_d13.b1 PHD_FILE: MSMg01no155_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:05 2005CHROMAT_FILE: MSMg01no155_d13.g1 PHD_FILE: MSMg01no155_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGGAGGTCTGATAGCACTGACCACTGTGGGACATGGCCTTTCCAG
AGGACACTGATGCTCAACTACAACGGCTAAGTCAAATCAAGGCTTTGCTG
AATGGCCCTCTCCGTGGAATTCTACATTTAATCGCATAAAGTGCTAATGT
TGCATGTTTGAAACTGAACTCTACAATACATGCTAAGTGCATGCCCAGGT
GAACTGTCAACACACACAAATGATTCCCTCCTGTTCTCTGCAGTTAGCTC
TCTGCTCCAGTCTCCACCTTAAATCAGGACTTCAGTCTACCGCATGTTAG
GAAAGGCCACGTCTTACACGCGTTCACGACCGGCCAGGAAGTACGCAGCA
AACCGGAATCTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCA
GAGAGCAAGAGAGCAAGAGCTCTACTGCTTACATCTTTAGGAGCCAGAGC
GCAAGAGAGCAAGAGTGCAAGACCAAGAGAGAGCAAGAAAGCAAGAAAAA
GAACAAGACAGCAAGAGAGAGAATGGTAAAACCCCGTCCCTTTTAAGGAG
AATTATCCTCCACCTAGGTCGTATTACTCCCTGATTGGCTGCAGCCCATC
GGCCCAGTTGTCATCACGAGAAAGGCAGCACCCATGCCCGGAAAACTGCC
CCTGCACGCGTGCCGATTATTGTTACTACCTATAAC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATAATTTGGAAATGAACAAACC
AAATATCTCATTTAGAAATGGGGTACAGAGCTAAACAGAGAATGCTCAAC
AAAATAATCTGTAATGGTTGAAAAGCACTTAATGAAATATTCAAGATCTT
TTGATATCATGGAAATATCTCTCAAAAATAATCTGAGATTCTACTTAACA
TTCATTAGAACAGCTAAGGCCAAAACACAAACAACTGTGCATGCTGAAGT
GGATGTGGAAAAAGGAGACTATTCCTTCATTGCTAATGTGAGTGCAAATG
TGTCCAACCATTCTGGGAATAAATTTGTAAATAATTGAGAAAATTTGGAA
CATGTCTACCTCAAGACTCACCTATATAACTCATTCTCAAATACCCAGAA
CATGTTTCACCATCCAAAATAGAAACTTGTTCAACTCTTTTCATAGCAGC
TTTATTAATAATAGCCAGAAAATGGAAGTAACCAAGATATCCCTTAACGA
AGAATGGATAAGAAAATCAGGTACATATACACAATGGAATATTATTCCAT
TTATTTTAATTTCTTATCAGAAACAAAGACATCATGAATTTTGCAGGCAA
ATGGGTGAAACTAGACAGTTTCTTCCTGAGTGAGATATCCTAGACCTAAA
GTGACATGCATAGTATATACTCACTCATAAAAGGATACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_d13.b1 MSMg01no155_d13.b1 CHROMAT_FILE:
MSMg01no155_d13.b1 PHD_FILE: MSMg01no155_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:05 2005
         (380 letters)



>mm_chr1_90172270_90173049
          Length = 780

 Score =  538 bits (278), Expect = e-157
 Identities = 290/294 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatagcactgaccactgtgggacatggcctttccagaggacactgatgctcaactacaac 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 gatagcactgaccactgtgggacatgacctttccagaggacactgatgctcaactacaac 260

                                                                       
Query: 61  ggctaagtcaaatcaaggctttgctgaatggccctctccgtggaattctacatttaatcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctaagtcaaatcaaggctttgctgaatggccctctccgtggaattctacatttaatcg 320

                                                                       
Query: 121 cataaagtgctaatgttgcatgtttgaaactgaactctacaatacatgctaagtgcatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 cataaagtgctaatgttgcatgtttgaaactgaactctacaatacgtgctaagtgcatgc 380

                                                                       
Query: 181 ccaggtgaactgtcaacacacacaaatgattccctcctgttctctgcagttagctctctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggtgaactgtcaacacacacaaatgattccctcctgttctctgcagttagctctctg 440

                                                                 
Query: 241 ctccagtctccaccttaaatcaggacttcagtctaccgcatgttaggaaaggcc 294
           ||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 441 ctccagtctccaccttaaatctggacttcagtctactgcatgttaggaaaggcc 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)