BAC Information

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BAC

Clone NameMSMg01-155K15
Chromosome1 (Build37)
Map Location 129,651,458 - 129,651,620
singlet/doubletsinglet
Overlap geneAcmsd
Upstream geneE030049G20Rik, LOC383559, Mgat5, LOC667090, Tmem163
Downstream geneCcnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155K15.T7 (MSMg01no155_k15.b1)MSMg01-155K15.TJ (MSMg01no155_k15.g1)
ACCAG356612AG356613
length791787
length of high quality
(start - end)
169 (73 - 241)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no155_k15.b1 PHD_FILE: MSMg01no155_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:36 2005CHROMAT_FILE: MSMg01no155_k15.g1 PHD_FILE: MSMg01no155_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAAGAGCATGCTCGGATTGTATCCATGGAAGGGTGGTTTTTC
CAGCAGAGCTTCTGATAGACAGGGTGATAGACAATACCATTTCCTTCTGG
TTCTTTGTGAGTCAGCTTTCTACTAAGCAGTTGAATGATAGCTCTTCACC
CATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCCCCCC
CTCNNTTTCTCCTCCCCCTTTTTTCTCCCCCCCCCCCTCTTTTTTTTTTT
TTTTCCCCCCCCCCCCCCCCTCTTTTTTTTTCTCTCTCCCCTCTCTAAAA
ATACAAATTTATTAACACTTTTCTCCACCCTCCTTACTTTATTTTCTTAT
ATCTCTCCTACTTAATTCAGGTTTTTCCCCCCCCTTTTTTGTTGTGACCT
CGATTTTTCCTTTCTCCTTTATCTTATTAATTCCTCTCCTCCCTTATTTT
GTATCCATTTCAACATTATATTCTCACCCCTTTTTTTTTTCCTCCCTCCT
TCTCCCTCCCCCCTCCCTCCCCCGTTATCTACACTTCCCCCTTTTATTTT
CCCCTCTCTTTTTTTTTATCTTTGTTTTCCCCCCTCTATTTCTCCCCCCC
TTTCCTTTCCCCCTCCTCTTTTTTTTTATTCCACCTTTTTTTCTCCCTTC
CCTTTTTTTTTTCCTCCCCTCTCCCTTTTTTTTTCCTTATCCCCCTTTTT
TTTCTCCCTTTTTGTTCTTTTTTCCTCTTTCCCCTTTTTTG
NTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAATTTTACAACTGTTACCGCAT
TGAACATCAGAATGCTGTTGGCACCCCTAAAAGGAGATCTCTACCTCTTA
GAAGTCACTTCTCATGGGTACCAACATTTCCAGTCCCAGGCAACTGTTAA
TTTTCTTTTCCCTGCCACATATTTGCCTGCCTGTTGTGAATTAGTCACAT
AAAGCAAATCACACAACATCATATACATCATATATATGTATGTGTGTGTA
TACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGATATTTTTTTTCTTTTTTGCCCTTCATCTTTATCC
TATTCCCCTTTCCTCTCCCCCTCTCCTCCCATTTTCCCTTCTTTCTCCCT
TCCTTCCCCTCCCCTTCCTTTTTCTCCCCTTCTTCCCTTTCCCTCCCCTT
CCTTTTTCCCCCCTTTTTTTCCCCTATATTTACCACCGTTTTACCCCCCC
CCATTTTCCCATTCCCCCTTTTCCCCCTTTTTTTCCCTCTTTTTTTCCTC
CCTCCGCCTTTTTCCCATTTACTTTTTCCCTTTTTTTCCATATATAACCG
CCTTTCCCCGTTTTCCCCTTCCCTCCTTTTTCCCCTTATTCCCCTTTTTC
CCCGTTTTTTTTCCCTTTTCCCTTTTTTTACTTTTATCCCCCGCCTTTTC
TCATTTTCCTCTCCCACCTTCGCCCCCTTTTTACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_k15.b1 MSMg01no155_k15.b1 CHROMAT_FILE:
MSMg01no155_k15.b1 PHD_FILE: MSMg01no155_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:36 2005
         (169 letters)



>mm_chr1_129651292_129651860
          Length = 569

 Score =  281 bits (145), Expect = 2e-80
 Identities = 160/167 (95%), Gaps = 4/167 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattgtatccatggaagggtggtttttccagcagagcttctgatagacagggtgatagac 60
           |||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gattgtatccacagaagggtgttttttccagcagagcttctgatagacagggtgatagac 270

                                                                       
Query: 61  aataccatttccttctggttctttgtgagtcagctttctactaagcagttgaatgatagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aataccatttccttctggttctttgtgagtcagctttctactaagcagttgaatgatagc 210

                                                          
Query: 121 tcttcacccatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 167
           |||||||||    ||||||||||||||||||||||||||||||||||
Sbjct: 209 tcttcaccc----gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)