BAC Information

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BAC

Clone NameMSMg01-155M18
Chromosome1 (Build37)
Map Location 172,694,765 - 172,844,102
singlet/doubletdoublet
Overlap geneAtf6, Dusp12, Fcrlb
Upstream geneLOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
Downstream geneFcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155M18.T7 (MSMg01no155_m18.b1)MSMg01-155M18.TJ (MSMg01no155_m18.g1)
ACCAG356711AG356712
length745736
length of high quality
(start - end)
429 (73 - 501)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no155_m18.b1 PHD_FILE: MSMg01no155_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:46 2005CHROMAT_FILE: MSMg01no155_m18.g1 PHD_FILE: MSMg01no155_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,843,676 - 172,844,102)(172,694,765 - 172,695,055)
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCG
GAATTCTCAGAGGTAACATTGATGCCTCAGCAAAACTGGAGGATGGGATC
TTGGAGAGCTGACTGTATCTGACCACTGATCTCCTTCCTGCTAGGGTTCC
AAGGAAGGCAGATGTCCTGGTTCTAAACAGCCGCCAGTGCAGACAGGGCA
GAGCTCAGGGAGACATACTATCAGGTTGGAAACTTCATTAAATATTTACT
TGAAACTTGGGCTCTTCATTGCTCAGGTGTGGTCACGTGGCTCAGAGGAG
CGAAGCAGAGAGGTCGGATTTGAGAAGCCTCCGAGGGGCTCATGCAGTCA
GTGGCCTCTCTCCCAGGCCATAGCCCTGTGGACTAGGACTTGGCTGGGGA
AGGGTGTTAGGGTCAGACGGAAGGCAAGAAGAAAGGAGCAAGCAAGTGAA
GGTACCATAGCTCGAGATCATTGTGGGTGGGGAGGGAAGAAGTGTTTCAC
ATTCGATGACGGCATGACGAATACATACCTTATACTTCTGCCTTTCACCT
GGTGAACATCAGGTCACCAGGAGCATATTATTATGCCTGTTCCTTCCCCT
TTCTGCCTATCCACGTTTTGCTAGTACCCATTTTCCGCTTTCTCCCACCC
CATTGCCCCCCTCTGCCTTTTTTCCTTTGACAAATTGCTATCCCCCCATT
TTTTTCCCCCTTCCAAGCCCCCCCACCCACCATTTTTCCCCCCTT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAATGTAACTTAATTTCTTCTAC
TGCTGGAGAGCACTAAAGTGCAGGAAAAACCCCAGTCTGATCTGGAAGAT
AGTCCATTTTGGGACTTGGCTTTGTGATGAATGAGTGGTGGGGTGCTGTA
AAATTTCTTCCTATAAATAATAAGGGCAAAACCACCTTTTTATGTCTCTG
AAATATAAAGTGGAAACTCTATCAAGAAACTGCAAAATAAACTTTACAAG
CAGTATCACTTGAGGCAAATATTATTTTCAATATGCCATTGTTGTAAAAG
TTTATGGAACACGAGATTAAATAACACCCTAATATGGCCAAACTGTGAGA
GGAATTTAATTCTCCTGATTGTAGATTTACTTCCTGTTCATGAACTCATT
CAAGGTTTTCACTGATAAGAAACAATAGCACTTGACATTCTCCACACAAA
AGACACTATATGACCTTACTGCTGACATATTGTATGTCTAAATGATACAA
TTCAGCTATTGAGTTGAAGATTCTTCCTCCAGGTCTTATTTTATACCATT
CCCTTAAATTTTTTCACCCCATTCCCATCAATGACCATCCTTCTAACACA
TAATACTGCCTCCTTTACCGCCTCCCTTGTTTTCCAGAGACACCTTCTCA
ACCGTATTTCTTATTCCGTTTACCTTTTTTCCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_m18.b1 MSMg01no155_m18.b1 CHROMAT_FILE:
MSMg01no155_m18.b1 PHD_FILE: MSMg01no155_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:46 2005
         (429 letters)



>mm_chr1_172843476_172844304
          Length = 829

 Score =  826 bits (427), Expect = 0.0
 Identities = 427/427 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcctcagcaaaactggaggatgggatcttggagagctgactgtatctgaccactgatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgcctcagcaaaactggaggatgggatcttggagagctgactgtatctgaccactgatct 568

                                                                       
Query: 61  ccttcctgctagggttccaaggaaggcagatgtcctggttctaaacagccgccagtgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ccttcctgctagggttccaaggaaggcagatgtcctggttctaaacagccgccagtgcag 508

                                                                       
Query: 121 acagggcagagctcagggagacatactatcaggttggaaacttcattaaatatttacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acagggcagagctcagggagacatactatcaggttggaaacttcattaaatatttacttg 448

                                                                       
Query: 181 aaacttgggctcttcattgctcaggtgtggtcacgtggctcagaggagcgaagcagagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaacttgggctcttcattgctcaggtgtggtcacgtggctcagaggagcgaagcagagag 388

                                                                       
Query: 241 gtcggatttgagaagcctccgaggggctcatgcagtcagtggcctctctcccaggccata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtcggatttgagaagcctccgaggggctcatgcagtcagtggcctctctcccaggccata 328

                                                                       
Query: 301 gccctgtggactaggacttggctggggaagggtgttagggtcagacggaaggcaagaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gccctgtggactaggacttggctggggaagggtgttagggtcagacggaaggcaagaaga 268

                                                                       
Query: 361 aaggagcaagcaagtgaaggtaccatagctcgagatcattgtgggtggggagggaagaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaggagcaagcaagtgaaggtaccatagctcgagatcattgtgggtggggagggaagaag 208

                  
Query: 421 tgtttca 427
           |||||||
Sbjct: 207 tgtttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_m18.g1 MSMg01no155_m18.g1 CHROMAT_FILE:
MSMg01no155_m18.g1 PHD_FILE: MSMg01no155_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:47 2005
         (291 letters)



>mm_chr1_172694565_172695255
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcaatgtaacttaatttcttctactgctggagagcactaaagtgcaggaaaaacccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcaatgtaacttaatttcttctactgctggagagcactaaagtgcaggaaaaacccca 260

                                                                       
Query: 61  gtctgatctggaagatagtccattttgggacttggctttgtgatgaatgagtggtggggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctgatctggaagatagtccattttgggacttggctttgtgatgaatgagtggtggggt 320

                                                                       
Query: 121 gctgtaaaatttcttcctataaataataagggcaaaaccacctttttatgtctctgaaat 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgtagaatttcttcctataaataataagggcaaaaccacctttttatgtctctgaaat 380

                                                                       
Query: 181 ataaagtggaaactctatcaagaaactgcaaaataaactttacaagcagtatcacttgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaagtggaaactctatcaagaaactgcaaaataaactttacaagcagtatcacttgag 440

                                                              
Query: 241 gcaaatattattttcaatatgccattgttgtaaaagtttatggaacacgag 291
           |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaatattactttcaatatgccattgttgtaaaagtttatggaacacgag 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)