GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCG
GAATTCAACTTGATTCCGATCTTGAAGCTTCCTCCTTCAAAGCGCGGGGA
GGTGGTATATGGGCTTCTGGGAGCTGGTTATCTTCAACAGTTCTAACTCA
TCTCTCAACCTCACAGGCTACACTACCAACCTGCCAGGTAAGCTGTTCCT
TTCCGCTTAATAGTGGTGTGGCTGTTATAGGCCGTCACTTTCTGACTGGT
GTGTTTCTGGGCTATGGTGAGTTCAGGCATCCTGGTGAAGAGGGAATGGA
GGCACCAAGTTCTTTTCCTCATGGCATCCAGGAAGCAAAAGTTGGTACCT
GGAACAAGGTATAGCACCAAGGACACACTCCAGTGATTCATTTTCTCAAG
ATAGACTCCTACCTTGCAAAGGCTCCGAACCCTCCAAATAGCTGAGTGTT
TGCATAAGAATTATTTCCATTGCAGAAGGGAAGAGTTTAGAAAGAAAGGG
TAGGATCAAAACAAGGACTAAACCCAGTATAGCAAACACTCAACCTGTTG
TGGACAGACAGCATCCAGGACACATGGTGGCATGCTGCGAACTCTCCAGG
ACTGGTACTGGTGCTTTGTGCTCCAAGTACTTTCCTCAGCACATGTTAGG
AAGATTCTGGTTGAGAGGGGTCTAAAGAATCTGTGCCCTCATGTATCTCA
TATGGATTCCCATCCTCAATATCGCCCATT

CATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAACAGAGGGGGCTGGGTGATTTC
ATCAGGCTTCTATGGTGCTAAAATAACAGATGAGGAACGAGGGGTGCACC
TGAAGATGTAGTGGGAGCCATTGTTCGGAATTCTTTCAGTCTCCCCAAAG
ACATCCTGTAAAGATTTAGTATTTAGTGAAATTGGTTTCTGAAGCCAGTC
ACCGCCTGCGAGTAACCCAAGCATGCGAAAGTCACCTAGGACAGCTAATA
TATTGCTGGTGTGTTTGTTGGTGCCTTTAAACTCACGCCTTCTGTTCAAA
TGAGCAGAGCCCAGTAGTAATTCACACCGAAAGACTGTGTGAGTGTGGGA
AGGAAGGAATATAACTCCCACGGGCTCCATTTACAATATAAGAAGCCCTT
ATAGCATGTTGTTAATTTATGCACGCGTTGGACTGCTGAAAAGCACCGAG
CATTTGTTGTCAGCCCCGATTGGATCTCTGGAGATCACTCCACCCGGTGA
TTGACAGCCCTTGCCTGTCGCTTCTCGCCTTCGTAGTTTGTACGATATGC
CTTTTTTTTTTTCCCCCTGCTCCTACTTTTCCGCATTCTCTTGTCCCCTT
TTAGCTCCTTCCTTTATCCCCTCTCCCTATTTACCCCTCCAGCGCCCACA
GCCCCTATATTCCCCTTTCCCTTACCCTGTTTATTCGCCCT

Query= MSMg01no155_o14.b1 MSMg01no155_o14.b1 CHROMAT_FILE:
MSMg01no155_o14.b1 PHD_FILE: MSMg01no155_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:55 2005
         (541 letters)



>mm_chr1_186464755_186465695
          Length = 941

 Score =  971 bits (502), Expect = 0.0
 Identities = 526/534 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcaacttgattccgatcttgaagcttcctccttcaaagcgcggggaggtggtatat 67
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 940 gaattcaacttgaatctgatcttgaagcttcctccttcaaagcgcggggaggtggtatac 881

                                                                       
Query: 68  gggcttctgggagctggttatcttcaacagttctaactcatctctcaacctcacaggcta 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 gggcttctgggagctggttatcttcaacagttctaactcatctctcaacctcacaggcta 821

                                                                       
Query: 128 cactaccaacctgccaggtaagctgttcctttccgcttaatagtggtgtggctgttatag 187
           |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 820 cactaccaacctgccaggtaagctgttcctttccccttaatagtggtgaggctgttatag 761

                                                                       
Query: 188 gccgtcactttctgactggtgtgtttctgggctatggtgagttcaggcatcctggtgaag 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gccgtcactttctgactggtgtgtttctgggctatggtgagttcaggcatcctggtgaag 701

                                                                       
Query: 248 agggaatggaggcaccaagttcttttcctcatggcatccaggaagcaaaagttggtacct 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 agggaatggaggcaccaagttcttttcctcatggcatccaggaagcaaaagttggtacct 641

                                                                       
Query: 308 ggaacaaggtatagcaccaaggacacactccagtgattcattttctcaagatagactcct 367
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 640 ggaacaaggtatagcaccaaggacacactccagtgattcattttctcaagatagactcat 581

                                                                       
Query: 368 accttgcaaaggctccgaaccctccaaatagctgagtgtttgcataagaattatttccat 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 accttgcaaaggctccgaaccctccaaatagctgagtgtttgcataagaattatttccat 521

                                                                       
Query: 428 tgcagaagggaagagtttagaaagaaagggtaggatcaaaacaaggactaaacccagtat 487
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 520 tgcagaagggaagagtttagaaagaaagggtaggatcaaaacaaggactaaaaccagtag 461

                                                                 
Query: 488 agcaaacactcaacctgttgtggacagacagcatccaggacacatggtggcatg 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agcaaacactcaacctgttgtggacagacagcatccaggacacatggtggcatg 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no155_o14.g1 MSMg01no155_o14.g1 CHROMAT_FILE:
MSMg01no155_o14.g1 PHD_FILE: MSMg01no155_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:55 2005
         (341 letters)



>mm_chr1_186313153_186313893
          Length = 741

 Score =  621 bits (321), Expect = 0.0
 Identities = 336/341 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaacagagggggctgggtgatttcatcaggcttctatggtgctaaaataacagatgagg 60
           |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 201 ctaacagagggggctgggtgatttcaacaggcttctatggtgttaaaataacagatgagg 260

                                                                       
Query: 61  aacgaggggtgcacctgaagatgtagtgggagccattgttcggaattctttcagtctccc 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacgaggggtgcacctgaagacgtagtgggagccattgttcggaattctttcagtctccc 320

                                                                       
Query: 121 caaagacatcctgtaaagatttagtatttagtgaaattggtttctgaagccagtcaccgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagacatcctgtaaagatttagtatttagtgaaattggtttctgaagccagtcaccgc 380

                                                                       
Query: 181 ctgcgagtaacccaagcatgcgaaagtcacctaggacagctaatatattgctggtgtgtt 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ctgcgagtaacccaagcatgcgaaagtcaccgaggacagctaatatattgctggtgtgtt 440

                                                                       
Query: 241 tgttggtgcctttaaactcacgccttctgttcaaatgagcagagcccagtagtaattcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttggtgcctttaaactcacgccttctgttcaaatgagcagagcccagtagtaattcac 500

                                                    
Query: 301 accgaaagactgtgtgagtgtgggaaggaaggaatataact 341
           |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 accggaagactgtgtgagtgtgggaaggaaggaatataact 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)