BAC Information

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BAC

Clone NameMSMg01-156A12
Chromosome1 (Build37)
Map Location 17,986,950 - 17,987,263
singlet/doubletsinglet
Overlap genenone
Upstream geneJph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564
Downstream geneLOC100040126, Crisp4, EG574082, EG654460, Defb17, LOC383499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156A12.T7 (MSMg01no156_a12.b1)MSMg01-156A12.TJ (MSMg01no156_a12.g1)
ACCAG356876AG356877
length760752
length of high quality
(start - end)
319 (36 - 354)153 (58 - 210)
definitionCHROMAT_FILE: MSMg01no156_a12.b1 PHD_FILE: MSMg01no156_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:04 2005CHROMAT_FILE: MSMg01no156_a12.g1 PHD_FILE: MSMg01no156_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:04 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACA
AGCTGTTTCTCTGTAACTGTCTCTTTTAAGAGTTCTTTCCTCCCAGGTTT
TAACCTCATTGGAGAGTTGAGAGTTATCACTTAATAGCTGATTATTTTGC
TTTCTAAGCTGCTCATTTTGCTGCTTTAACTTAGAAATTTCACTTTCCAT
CCTATTATATTCACTTTTCAAAATAAAAGCTTTTGTGCTTTGTACAATTC
CACTGCCACCTCCACAGGTTAGAGGTTTACTCAGAAGCTGAGAGTCTTGT
TCTGATATCATTGAGGTATCCTGGGCCTATTGATTTCTTCTAAGATTTTC
TCTCTTGTATCCTTACCCTCCCCTCTTAATGTACAACAGTGGCTTTTATA
GAAAGAACTCTCTTTTTAGATTCCTTGGCCTTTGCCTTCTTTTTTAGGTC
ACTCTTCATCAGCTGCATCTTGAGATCATCAAATTCTTCTTTATAGGGCA
TAGCTCCTAAAGCAGTTTTGTCCTTTGAGGTCAGTTGTTCAACTCCTGAT
GCAACACGAGGATGCTCACTGTCCCATGTGGAAGGCTACACAGTAGGATG
GAGATGCACAACAGACTGTGAGGCAGTCAATGTCTGGTAGACTTCAGATA
GTTGTTCAGTTGTTTCTTTCAGTGACTTCNGGTAATGTTCCCAATTCCTT
GGATCTGGTAACATTTATCATGCCCGTGATTTTGCCGTCAAACAAATTAT
TCCTCGCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAAAGAGTTAGAAAGAGTGATTTGCAAATTCATCTAGAATAAAA
AAAAAAATCCTAGGATAGTGAAAACTCTTCTCAACAATAAAAGGACTTTT
GGTGAAATCATCGTCTCTGACCTCAATTTGTACTATCAAGCAATTGTGAT
AAAAAATGTATGGAACTGGTACAGTGACAGGCAGGTAGATCAGTGGAATA
AAATCGAAAACCCAGAAATGAACCCACAATTCTATGGTCACTTGATTTTT
GACAATGTAGTTAAAACCATCCAGTGAAAAAAAGACAGCATTTCCATTTT
TTGTTCCCCCCCCACCTGGTGTTTACCATGCAAAAAAATGCAAATCAATC
CATCCTTATCACCATAAGAATAAAGCTCAATTCCAAGTGGATTAAGCACC
TCCACATAAAATTTGATACACTGAAAGTAATAGAAAAGGAAGTCAGGAAA
AGCCTCGAGCACATGGGCATGGGGGGAGGTTCCTGATTGAAATACAAATA
GCTTATGCTCCAATATCAAGAACTGACAAATGGGACCTCATAAAATTGCT
AAGTTTCTTGTACGGCAAAGGACTTTGGAAATATTACAAATTGGCAACCC
AAAGAATTGGTAAAAGATCTTCCCCAATTCTATATCCCATAGAAATGTTA
ATTTCTTAGTACTTATAAATAACTCTAAAATGTAGACCCCAGATATACCA
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_a12.b1 MSMg01no156_a12.b1 CHROMAT_FILE:
MSMg01no156_a12.b1 PHD_FILE: MSMg01no156_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:04 2005
         (319 letters)



>mm_chr1_17986746_17987464
          Length = 719

 Score =  600 bits (310), Expect = e-176
 Identities = 313/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcacaagctgtttctctgtaactgtctcttttaagagttctttcctcccaggtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattctcacaagctgtttctctgtaactgtctcttttaagagttctttcctcccaggtt 459

                                                                       
Query: 65  ttaacctcattggagagttgagagttatcacttaatagctgattattttgctttctaagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttaacctcattggagagttgagagttatcacttaatagctgattattttgctttctaagc 399

                                                                       
Query: 125 tgctcattttgctgctttaacttagaaatttcactttccatcctattatattcacttttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tgctcattttgctgctttaacttagaaatttcactttccatcctattatattcacttttc 339

                                                                       
Query: 185 aaaataaaagcttttgtgctttgtacaattccactgccacctccacaggttagaggttta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aaaataaaagcttttgtgctttgtacaattccactgccacctccacaggttagaggttta 279

                                                                       
Query: 245 ctcagaagctgagagtcttgttctgatatcattgaggtatcctgggcctattgatttctt 304
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 278 ctcagaagctgagagtcttgttctgatatcattgaggtatcttgggcctattgatttctt 219

                         
Query: 305 ctaagattttctct 318
           ||||||||||||||
Sbjct: 218 ctaagattttctct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)