Query= MSMg01no156_b14.b1 MSMg01no156_b14.b1 CHROMAT_FILE:
MSMg01no156_b14.b1 PHD_FILE: MSMg01no156_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:08 2005
(329 letters)
>mm_chr1_129681500_129682225
Length = 726
Score = 590 bits (305), Expect = e-173
Identities = 319/325 (98%), Gaps = 3/325 (0%)
Strand = Plus / Plus
Query: 5 gaattctaaacaactattctgttgagcagcaacccagctgaaaactgattcttaactctg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaacaactattctgttgagcagcaacccagctgaaaactgattcttaactctg 264
Query: 65 ttttgtataaaatagctatctatagtagagtacttgagaccagatagtttataatgttca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttgtataaaatagctatctatagtagagtacttgagaccagatagtttataatgttca 324
Query: 125 gaaataggctcacagatctgcaggctagatggcctaaaatgaagagcctaacttacagca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaataggctcacagatctgcaggctagatggcctaaaatgaagagcctaacttacagca 384
Query: 185 agggtcctagcgtcctgtgaagaagaaagagcacaagaacacaagagagggaaccttgtc 244
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 agggtcctagcgtcctgtgaagaa---agagcacaagaacacaagagagggaaccttgtc 441
Query: 245 tccctctttacactgactttcaaggcagctttagaacaagagttagattgttaatggttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tccctctttacactgactttcaaggcagctttagaacaagagttagattgttaatggttt 501
Query: 305 gtaagtgattaaaatattttcctaa 329
||| || ||||||||| ||||||||
Sbjct: 502 gtaggtaattaaaatagtttcctaa 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 726
Length adjustment: 9
Effective length of query: 320
Effective length of database: 717
Effective search space: 229440
Effective search space used: 229440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no156_b14.g1 MSMg01no156_b14.g1 CHROMAT_FILE:
MSMg01no156_b14.g1 PHD_FILE: MSMg01no156_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:08 2005
(570 letters)
>mm_chr1_129823999_129824968
Length = 970
Score = 1064 bits (550), Expect = 0.0
Identities = 565/570 (99%)
Strand = Plus / Minus
Query: 1 ctgaaagaagtcagatatttggtgataaaaaaaaaatcctagctaaacaactggaaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ctgaaagaagtcagatatttggtgataaaaaaaaaatcctagctaaacaactggaaatta 711
Query: 61 aaattattaccctggaatcagaaagttgttttcccatctgaaacgcatttcaagaacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 aaattattaccctggaatcagaaagttgttttcccatctgaaacgcatttcaagaacaaa 651
Query: 121 ttcctgccagagatgtgccactcccttcagccctccatggtagaagttgatcatacaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttcctgccagagatgtgccactcccttcagccctccatggtagaagttgatcatacaaag 591
Query: 181 acacaaggccagtttgtatgttagactgtcggaaggcgcagacttgaactgattgtagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 acacaaggccagtttgtatgttagactgtcggaaggcgcagacttgaactgattgtagag 531
Query: 241 agtctaaattttacaaaagaaaaacaaagcaaaacctgttaacagcaaatttgcatactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 agtctaaattttacaaaagaaaaacaaagcaaaacctgttaacagcaaatttgcatactt 471
Query: 301 aaagagtacataagaagaatcttccatcaaaattaacccatcacaccccgctgcaagaca 360
||||||||||||||||||||||||||||||||| ||||||||| | | |||||||||||
Sbjct: 470 aaagagtacataagaagaatcttccatcaaaataaacccatcagaatctgctgcaagaca 411
Query: 361 aacttaagaatttgacaagaactctaaactacgaggatccaacagctatgtatacgattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aacttaagaatttgacaagaactctaaactacgaggatccaacagctatgtatacgattc 351
Query: 421 ttatgctattcgtttctatttcccaagaagctgctttgctctacaaaacagctatatcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttatgctattcgtttctatttcccaagaagctgctttgctctacaaaacagctatatcta 291
Query: 481 cacagatgttctaagccggtcatcatctgagtggctgtgaacaccactcagttttcccag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cacagatgttctaagccggtcatcatctgagtggctgtgaacaccactcagttttcccag 231
Query: 541 atagatttttaaatgaagagatacttaggt 570
||||||||||||||||||||||||||||||
Sbjct: 230 atagatttttaaatgaagagatacttaggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
