BAC Information

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BAC

Clone NameMSMg01-156M14
Chromosome1 (Build37)
Map Location 20,768,216 - 20,768,485
singlet/doubletsinglet
Overlap geneIl17f
Upstream genePkhd1, Il17a
Downstream geneMcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156M14.T7 (MSMg01no156_m14.b1)MSMg01-156M14.TJ (MSMg01no156_m14.g1)
ACCAG357437AG357438
length774736
length of high quality
(start - end)
274 (23 - 296)49 (58 - 106)
definitionCHROMAT_FILE: MSMg01no156_m14.b1 PHD_FILE: MSMg01no156_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:00 2005CHROMAT_FILE: MSMg01no156_m14.g1 PHD_FILE: MSMg01no156_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGGACCAAGCTCTAGCT
GATAAGTAACTTCCTAGACCTCAGATGCCTCCACTATAAAACGGCGTTTC
ATCCATATCATTCTCTCAGAGAGTTGTTGGGGATATCACATGGTTTGAAT
GCATACAGAGTAACCCCATAAATACTTTGGTTACTCTTAAATCTACATTT
TCTTTGCATTCGTGTTATTACTCATCCTTTAAGCAGAGGTTGAACATCAC
TAGTAGGTCTCCCAAAGTACAATGCATAAAACTCACTGCTTGGAAAGCAT
AACGAAAGCCTTCAAGGTCTGTGAATCCAGAGCCTCTTTTTGTTCCTCCC
CCGCCCCTCCCCTCTGGCTGAAGACAGGCAGCCAAGTGAGCCCACCACAG
ACTACAAAACTCTCAAGAAGGGAGCTATGTATCAGCCTCAGAGCACTGCT
TTGTTCCTAGAATCTGTTTTTATTCGTGTATTTGAAGAGTATTGATGTGT
GGAGAGTGTTCATTATACATAAGTCTCTGTCATATACTCTATCTATTTTA
CAAGCTTGATTTACTTCCCTCCCCTGAATTAATCTTCTATTTATTAATTA
TAATGTATTAGTTCCATCTATATACCCATATTAGAACAATCATTGTTTTT
TTCGCTGATCATACACCATTCTTTTATAATAAAAAAATCTTTAACTTCTC
CATCTCCTATCTTCTTTGTATCATCNCGGGTTTTTTCTATCTTGTAACTC
AAATCTGACGTAATATATATACTA
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTGTTCTCTCTGGGGTGTGCTCGAACATTAGGATCATAGGGC
TAGGATCCAGTACTTTGGAAAGGGCAGCAACTTTAAGGCTGAACTGAGCT
AAACAGGGAAATACTGTCTCAAAAAACCAAACCAAACCAAAACCAAACAA
CAGCAAATAAAAGGGAAAAAAAAGGGTAAAAACTGGAGAAAGGGTTGGGA
AGCTATGGAAGGCTGTTTGGGAAGCATGACTGGGCCTTGCGTCCGGGAAG
GACAGCAGTTTTAATTTTAAAAAGAATTTTTGCACAAAACTTTTTTTTTT
GTCCCCACCCCCCCCCTATCAAAAATGGAAAAGGAGCTCAAAAGGCTGCA
CAATGTAACAAAAGAAACCCGATGGGACGGGGCCGGAAAAGCCCCCTCTA
GGGACTATTTAATTTACCATCCATCACTTCTTTGACTCTCTATGAAGAAC
TGACTTCAGGGTTTTCATTCCCACGGCCTCCCTACTCTTCAGTTGCTAAA
TCCCCAGAACAAATTCCAAATGGCTGGGCCGGTGTTCTGAATAATCTCAG
TGCGGATTTTGCTATTTCCCTTTTTTCAACTGGACAAAAATAGCAGGCCT
TGAATCCTAGGGGGGGACACAAGGAACACCTGGCCAGGGGTTTGTCCCCC
AAGAACCTCCCATACCCATTCCCATTACCTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_m14.b1 MSMg01no156_m14.b1 CHROMAT_FILE:
MSMg01no156_m14.b1 PHD_FILE: MSMg01no156_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:00 2005
         (274 letters)



>mm_chr1_20768012_20768685
          Length = 674

 Score =  478 bits (247), Expect = e-139
 Identities = 265/271 (97%), Gaps = 2/271 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttggaccaagctctagctgataagtaacttcctagacctcagatgcctccacta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttggaccaagctctagctgataagtaacttcctagacctcagatgcctccacta 264

                                                                       
Query: 65  taaaacggcgtttcatcc-atatcattctctcagagagttgttggggatatcacatggtt 123
           |||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaaacggggtttc-tcccatatcattctctcagagagttgttggggatatcacatggtt 323

                                                                       
Query: 124 tgaatgcatacagagtaaccccataaatactttggttactcttaaatctacattttcttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgaatgcatacagagtaaccccataaatactttggttactcttaaatctacattttcttt 383

                                                                       
Query: 184 gcattcgtgttattactcatcctttaagcagaggttgaacatcactagtaggtctcccaa 243
           ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 384 gcattagtgttattattcatcctttaagcagaggttgaacatcactagtaggtcttccaa 443

                                          
Query: 244 agtacaatgcataaaactcactgcttggaaa 274
           |||||||||||||||||||||||||||||||
Sbjct: 444 agtacaatgcataaaactcactgcttggaaa 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)