XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTCTTTCCTTGCAGTTTGGGGCTATTTCAAAATTTATGGGGCTTTATATT
TGCAAGAATCTTGCCCGCGTATATAGAAGGAGGTGACTAAGATAGGATTT
TGAAAATTATGTGTGCTGATCTTCTAGTTTTTTTCCCTCTGATTTTTAGT
CAGTAAAGCTATGTAGTATGTATGCAGCCTCTGCTACATTTCAGCATGGT
CCTAAGCCCTCTGTCATGCCTTCCCCACCATGATAGAATGCAGGCACTCT
GAAAACAGGAGCCAAAATAAACCCTTTCCCTTAAGTTGTTTTTCATCAAG
GATTTGACTCTAGCAACATAAAATAACTAATAAATCTTATATGAAAATAA
GCATCCTTTATAGACAAGAGGACTCAAATGTCAAGAAAAATTGAATACAT
ATAGTCAGCATTTTGACACTATTTTCCTTTAAAAAGAAATACAGTCATAT
GAGTGATTCAAAACCCTACTATTTTGTACATGGAATTTTTGTGAAAGAAA
TATCAGGGCTTATAGTAAATTTAACAAAAAATAAATTAAGTTTCTATCAT
GAGAATGCCACCTTCATGGAGTCACTTTAAACCATAGTCAATTGATCAGT
CATGATTCATGTCATGAATGAAGTTAATACTTGAAAAAAAAAGAATATTG
GCAAAGGTTCTCATATCCAAGAACCAAAAGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTATCCCCCCAACACCTTCTTTTTTGGAACATCA
TGGCACTTTCCCCAAAACTGACCTCATACTGGGACATAAAACAAGTTTCA
ACAAATTCAAAAGAATTTAAATAACTCCCTGTATCATATAAGGCCATCAC
AGATGCAAGCTGTATATCAACAGAAAGCATACTAACCCATGGAAACTGAA
CAACTCTCACTGGATGAAATATGGGTCAAGACAAATATAAGGAAAGAAAA
GACTTCCTAGGATGAAGGAAAATAAATACACAACATATCCAAATTCATAA
GATAAAATAAAATGAGCTCTAACACCCAATTTCATAGCACTAAGTGCCTA
CATTTAAAAAAAAATTATGTGAGAGATTTCATATTAGCAACTTAGCAGAA
CACCTGAAAGTTATAACATCAAAAGAAGAAATCACACCCATGAGAAATAG
ATGGCAGAGGGCTGAAATCAATAAAATAGTAAGAAGAACCAATGAAAGAA
CGAGTTGGTTCTTTGAGAAAATCAACAAGATTGGCTAAATTAACTAAAAG
GCAGAGAAAGAATATCCCAATTAACAAAATCAGAAGTGTAAAGGAAAGCA
TAACAACAGATACCAAAGAAATGCAGAGAATCGTGAGATACCTGGGAACA
TACAGTTCTTTTTTAATTAATTAATTAATTTTGTAT

Query= MSMg01no157_b15.b1 MSMg01no157_b15.b1 CHROMAT_FILE:
MSMg01no157_b15.b1 PHD_FILE: MSMg01no157_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:23 2005
         (607 letters)



>mm_chr1_96999702_97000708
          Length = 1007

 Score = 1166 bits (603), Expect = 0.0
 Identities = 606/607 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatatagaaggaggtgactaagataggattttgaaaattatgtgtgctgatcttctagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatatagaaggaggtgactaagataggattttgaaaattatgtgtgctgatcttctagtt 260

                                                                       
Query: 61  tttttccctctgatttttagtcagtaaagctatgtagtatgtatgcagcctctgctacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttccctctgatttttagtcagtaaagctatgtagtatgtatgcagcctctgctacat 320

                                                                       
Query: 121 ttcagcatggtcctaagccctctgtcatgccttccccaccatgatagaatgcaggcactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagcatggtcctaagccctctgtcatgccttccccaccatgatagaatgcaggcactc 380

                                                                       
Query: 181 tgaaaacaggagccaaaataaaccctttcccttaagttgtttttcatcaaggatttgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaaacaggagccaaaataaaccctttcccttaagttgtttttcatcaaggatttgact 440

                                                                       
Query: 241 ctagcaacataaaataactaataaatcttatatgaaaataagcatcctttatagacaaga 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagcaacataaaataaccaataaatcttatatgaaaataagcatcctttatagacaaga 500

                                                                       
Query: 301 ggactcaaatgtcaagaaaaattgaatacatatagtcagcattttgacactattttcctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggactcaaatgtcaagaaaaattgaatacatatagtcagcattttgacactattttcctt 560

                                                                       
Query: 361 taaaaagaaatacagtcatatgagtgattcaaaaccctactattttgtacatggaatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaaagaaatacagtcatatgagtgattcaaaaccctactattttgtacatggaatttt 620

                                                                       
Query: 421 tgtgaaagaaatatcagggcttatagtaaatttaacaaaaaataaattaagtttctatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgaaagaaatatcagggcttatagtaaatttaacaaaaaataaattaagtttctatca 680

                                                                       
Query: 481 tgagaatgccaccttcatggagtcactttaaaccatagtcaattgatcagtcatgattca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgagaatgccaccttcatggagtcactttaaaccatagtcaattgatcagtcatgattca 740

                                                                       
Query: 541 tgtcatgaatgaagttaatacttgaaaaaaaaagaatattggcaaaggttctcatatcca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtcatgaatgaagttaatacttgaaaaaaaaagaatattggcaaaggttctcatatcca 800

                  
Query: 601 agaacca 607
           |||||||
Sbjct: 801 agaacca 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)