BAC Information

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BAC

Clone NameMSMg01-157F14
Chromosome1 (Build37)
Map Location 135,502,959 - 135,614,126
singlet/doubletdoublet
Overlap geneSnrpe, Zc3h11a, LOC667118, Lax1, Atp2b4
Upstream geneNfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371
Downstream geneOptc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157F14.T7 (MSMg01no157_f14.b1)MSMg01-157F14.TJ (MSMg01no157_f14.g1)
ACCAG357851AG357852
length730732
length of high quality
(start - end)
320 (40 - 359)287 (69 - 355)
definitionCHROMAT_FILE: MSMg01no157_f14.b1 PHD_FILE: MSMg01no157_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:40 2005CHROMAT_FILE: MSMg01no157_f14.g1 PHD_FILE: MSMg01no157_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,502,959 - 135,503,271)(135,613,847 - 135,614,126)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GAAGTGTGCTTCTCCCTTCAAATGTAACTTTATAGCATGAATTTTCAGCT
ATAGGCCATTCAAGTCTGCCAGTGAAATAAACAGAAATCTGTAAAGCCAA
CTATCTCCTTACCCAGTTGTTTTCTTGACTTTGTTTTAGAATGAATCTCT
TCTGCATCATCTAATACGAGGTTCATGTACTCATCAAAGCCCTGGGAAGG
CAAATGACAATCATTTTCAAGCAAATCACATCCGACCATTCTAAAAGAAT
AATTAGATTCAGAAATATCAACAAATTTTAGAATTTTATGCTATCACTGA
TTTTTCTATTCTAACACCCACCCCCTCTACTTACTTATTAACTACTTTGT
ATTCTTTTAAAGTGTTACCTGTATGTATTTATTTTTGGATCGATGTGTGC
ACATTAAGACAGGTGCTTAAGGAGGGCAGAGGCACTAGATCCACCTGCCA
GAAGTACAGGCAGTTGTGATCCATCAAAGGTATATACTTTGAACTGAACT
TGGTCCTCTGCAAGAATAGCAAATACTTTTACCTGTTGAGCCCCTTACTT
CTGAGACAGCGTCTTATGTGGTCTATGTTTTGCCTAAACTTCCCACACAG
CCAATGAAAGCCTTAAACTCACAAATCTCCTATCCTCTCTATTCCAAGTG
TTGAGACTACCGGTATGTGCCACCATGTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTCATGACCTTTCTAAATGTGCAGAAGTTCC
ATATAGTGACCAAGAGAAGAGTCACTATCTCCTACCTCCTTCCCATGCCA
GCACAGATGAAATGGCGTGTGTATAGTAGTGTAGTAGTGTATAGGTAGTG
TAGGCTCCCAGTCCCCACCCTGGCCCTTTTGATCTGAGTGAGTTTCTGAT
TGGAAATGCTGCACGATTCACAGAGGAGTGATGGGTTGGTACGTACACAG
CTGCTGGGATAACCCTGCCTGGGCTCCTGGTATGAAAACGAGGATCAAAA
GCTTTTTTGCCTGCCCCCCGCCCACAGATGGGGTCCTTCCTTCTTGTCCC
AGTTCCGACTAGTGAACCTAGTTAGAGGTTCACTAAGATACTTGGCTACA
AAGGATTATGGGAAGGCCACACAACCGAAGAACATCTTCTTGGAGCTGGA
GACAGCAACAGTTAAGAGGGGGCCAGAGTTTAAATTCCAGCACTCGGTAT
CACTTGACTCCTGATCATCTGTAATGCTACCTCCAGAGGATCTGACACTC
TCTTCTGTCTTCTGTGGTACATGGATTAGGTTACAGACCCACACGTTGAC
ACACACATGCCTCGCACGCGCTCGCGCACACACACACACACACACACACA
CACACACCCACACTCTCGTTCCTCTTCTGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_f14.b1 MSMg01no157_f14.b1 CHROMAT_FILE:
MSMg01no157_f14.b1 PHD_FILE: MSMg01no157_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:40 2005
         (320 letters)



>mm_chr1_135502755_135503474
          Length = 720

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaagtgtgcttctcccttcaaatgtaactttatagcatgaattttcagctata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaagtgtgcttctcccttcaaatgtaactttatagcatgaattttcagctata 264

                                                                       
Query: 65  ggccattcaagtctgccagtgaaataaacagaaatctgtaaagccaactatctccttacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggccattcaagtctgccagtgaaataaacagaaatctgtaaagccaactatctccttacc 324

                                                                       
Query: 125 cagttgttttcttgactttgttttagaatgaatctcttctgcatcatctaatacgaggtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagttgttttcttgactttgttttagaatgaatctcttctgcatcatctaatacgaggtt 384

                                                                       
Query: 185 catgtactcatcaaagccctgggaaggcaaatgacaatcattttcaagcaaatcacatcc 244
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 catgtactcatcaaagccctgggaaggcaaatgacaatcatttttaagcaaatcacatcc 444

                                                                       
Query: 245 gaccattctaaaagaataattagattcagaaatatcaacaaattttagaattttatgcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaccattctaaaagaataattagattcagaaatatcaacaaattttagaattttatgcta 504

                        
Query: 305 tcactgatttttc 317
           |||||||||||||
Sbjct: 505 tcactgatttttc 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no157_f14.g1 MSMg01no157_f14.g1 CHROMAT_FILE:
MSMg01no157_f14.g1 PHD_FILE: MSMg01no157_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:40 2005
         (287 letters)



>mm_chr1_135613647_135614333
          Length = 687

 Score =  534 bits (276), Expect = e-156
 Identities = 279/280 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcatgacctttctaaatgtgcagaagttccatatagtgaccaagagaagagtcactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tttcatgacctttctaaatgtgcagaagttccatatagtgaccaagagaagagtcactat 421

                                                                       
Query: 61  ctcctacctccttcccatgccagcacagatgaaatggcgtgtgtatagtagtgtagtagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctcctacctccttcccatgccagcacagatgaaatggcgtgtgtatagtagtgtagtagt 361

                                                                       
Query: 121 gtataggtagtgtaggctcccagtccccaccctggcccttttgatctgagtgagtttctg 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 360 gtataggtagtgtaggctcccagtccccaccctggcccttttgttctgagtgagtttctg 301

                                                                       
Query: 181 attggaaatgctgcacgattcacagaggagtgatgggttggtacgtacacagctgctggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 attggaaatgctgcacgattcacagaggagtgatgggttggtacgtacacagctgctggg 241

                                                   
Query: 241 ataaccctgcctgggctcctggtatgaaaacgaggatcaa 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ataaccctgcctgggctcctggtatgaaaacgaggatcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)