Query= MSMg01no157_f23.b1 MSMg01no157_f23.b1 CHROMAT_FILE:
MSMg01no157_f23.b1 PHD_FILE: MSMg01no157_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:42 2005
(355 letters)
>mm_chr1_154904326_154905081
Length = 756
Score = 623 bits (322), Expect = 0.0
Identities = 344/356 (96%), Gaps = 9/356 (2%)
Strand = Plus / Plus
Query: 1 cttaagaaa-gtgctgagatggttcacttgagaaatgacctttgcagagactttaattag 59
||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 201 cttaagaaaagtgctgagatggttcacttgagaaatgacctttgcagtgcctttaattag 260
Query: 60 tctgaaaaatggtccggcctgctgcaactttaattcctggaagcatgctttctactggac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgaaaaatggtccggcctgctgcaactttaattcctggaagcatgctttctactggac 320
Query: 120 tatgtacagatgtgctctctggggtctcctcttgccttttgagattggggagatagtgtg 179
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgtacagatgtgctctctggtgtctcctcttgccttttgagattggggagatagtgtg 380
Query: 180 accacttatttcacactgtgcacactttccacatgcacgcacgcacacacacacacacac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accacttatttcacactgtgcacactttccacatgcacgcacgcacacacacacacacac 440
Query: 240 acacactcagtatgccactgtcacactgtggagcaaactattttgttttgcaaatacaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacactcagtatgccactgtcacactgtggagcaaactattttgttttgcaaatacaat 500
Query: 300 gtacccaggtcatacataatcataacaaaacagacctacacaagtaatgagctgta 355
|||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 gtacccaggtcatacataatcataacaaaaca--------caagtaatgagctgta 548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 756
Length adjustment: 9
Effective length of query: 346
Effective length of database: 747
Effective search space: 258462
Effective search space used: 258462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_f23.g1 MSMg01no157_f23.g1 CHROMAT_FILE:
MSMg01no157_f23.g1 PHD_FILE: MSMg01no157_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:42 2005
(661 letters)
>mm_chr1_155044668_155045728
Length = 1061
Score = 1168 bits (604), Expect = 0.0
Identities = 646/660 (97%)
Strand = Plus / Minus
Query: 1 caggattctcaccatgtgtcatacatagctcttttccctctctttcctccctttggttgt 60
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 860 caggattctcaccatgtgccatacatagctcttttccctctctttcctctctttggttgt 801
Query: 61 ctctgttcctaatggttccacacatcttgctcctcttgttaatgcaaaaaagcaagaaag 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 800 ctctgttcctaatggttccacacatcttgctcctcttgttaatgcaaataagcaagaaag 741
Query: 121 gccaggacaacaaacaggactggctactatttgggccaggaatttatcctctggaaaatc 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 740 gccaggacaacaaacaggactggctactatttgggccaggaatttatcctttggaaaatc 681
Query: 181 gtagcaagaacatgtggggggcaaggagcacgatggacaggcagactggacattgccctg 240
||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct: 680 gtagcaagaacatgtggggagcaaggagcacgatggacagacagactggacattgtcctg 621
Query: 241 ccctgattttagaggccacaccccctgagacagacctggtgttgccaggctgtgattcga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccctgattttagaggccacaccccctgagacagacctggtgttgccaggctgtgattcga 561
Query: 301 agatcatttcttctgtgtctgctgtaggattctgagacgtgccacctaacacttggtaag 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 560 ggatcatttcttctgtgtctgctgcaggattctgagacgtgccacctaacacttggtagg 501
Query: 361 ttgacaatccagcagccagtttcagtagtttggttccagagaacaataaaatcagactat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttgacaatccagcagccagtttcagtagtttggttccagagaacaataaaatcagactat 441
Query: 421 gtgaaacaacaacaatcaaagacaattctacaaagaacaaagggccacagctagaatgga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtgaaacaacaacaatcaaagacaattctacaaagaacaaagggccacagctagaatgga 381
Query: 481 ggcacaatacaggggctgagtcctcttaagcttcaaaaccaagagccattgttctaaagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggcacaatacaggggctgagtcctcttaagcttcaaaaccaagagccattgttctaaagc 321
Query: 541 atttattgtttctttttaaattctgcttagaaagggacaagagaaagaactatcttagag 600
|||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 320 atttattgtttcttttaaaattctgcttagaaagggacaagagaaagaaccattttagag 261
Query: 601 acttctgtcaatcccacactgcgcccttcccttgttgaatagcacctttaatatctaggg 660
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 260 acttctgtcaatcccacactgcacccttcccttgttgaatagcacctttaatatctaggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
